Gossypium hirsutum (upland cotton): 107945193
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Entry
107945193 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107945193
03015 mRNA surveillance pathway
107945193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107945193
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107945193
mRNA cycle factors
P-body specific factors
107945193
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
107945193
NCBI-ProteinID:
XP_016734559
UniProt:
A0A1U8N6G8
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Position
D12:complement(6660770..6667057)
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AA seq
516 aa
AA seq
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MVRFFEGMKGTLDRTKVILRHLPPSITESMLLEQVDSAFSGRYNWLSFRPGKSSQKNLSY
SRAYVDFKRPEDVLEFAEFFNGHVFVSEKGAQFKAVVEYAPSQRVPKQFSNKDGREGTIS
KDPEYLEFLEFLAKPVENLPSAEMQLERREAERAGVSKDSPIVTPLMDFVRQKRAAKGAS
RRSLSNGKVSKRAGGLSGGSPSSASSRRGSEKRRGSTTVYVLRDSLKNASGKDKSAYILV
SKRDDKQLSDKHATLATPVGTQISEEESGVSGITDAGKKKVLLLKGKEGEFSHVAGSMLR
QQDIASPITKILGSTPIKQNVGCEGRIIRGVLLNKDARQSSRVQSEQQLQAPNLEKDRRP
SRHSHAQLMLKDTNSSDDKVGSDLHGSEKPERCRRNKDRPDRGVWTLRRSDGSYASDESL
SSSASQSAQMPLDSSEGAYGDTKVDLSNVRSMQPKTVRSGRNSSFDGGSSKHGSRCRAVA
DGSSVVSDGKPGKRGNASAYGSHEKQVWVQKSSSGS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggttaggttttttgaaggcatgaaggggactttagatcgaaccaaggtgattctccgc
cacttacctccgtccatcacggagtccatgcttctcgaacaagtcgatagtgccttttct
ggccgttacaactggctctcctttcgtcccgggaagagtagtcagaagaatttgtcttat
tcaagagcatacgtggacttcaagaggccagaggatgttttagagtttgcagagttcttt
aatggtcatgtatttgttagtgagaagggggctcagttcaaagctgttgttgagtatgca
ccttctcaacgtgttccaaagcagttctctaataaggatggtcgtgaagggaccatatcc
aaagatcctgagtatttggagttccttgaattccttgcaaagccagttgagaatcttcct
agtgccgagatgcaattagagagaagggaggcagaaagagctggtgtatcaaaggatagt
ccgatagttacacctttaatggattttgttagacagaaaagagctgctaagggtgcatct
cggaggtcactgtctaatgggaaagtgagcaaaagagctggtgggttatctggtgggagt
ccaagttcagcatcatccagaagaggttctgaaaagcgaaggggtagtactacggtgtat
gttctaagggatagcttgaaaaatgcaagtggcaaagacaagtccgcttacattctggtt
tccaaaagggatgataagcaactttctgataagcatgctaccttagctacacctgtggga
actcaaatatctgaagaggaaagtggagtttctggaattactgatgctggtaaaaagaaa
gttctgctccttaaagggaaagagggagaattttctcatgtggctggaagcatgttacgt
caacaggatattgcatcgccaattacaaaaatacttggctcaactcctatcaaacaaaat
gttgggtgtgaaggcagaattatcagaggtgtacttttaaacaaggatgctcgtcagtct
tctcgggtccagtcagagcagcagcttcaggccccaaatttggaaaaggacagacgacct
tctcggcattcacatgcacaattaatgttgaaggatactaacagttcagacgataaggtc
gggagtgacttgcatggtagtgagaagccagagaggtgtaggagaaacaaagacaggcca
gaccgtggtgtatggacccttcgccgttctgatggatcatatgcaagtgatgagtccttg
tcatcatctgcttctcaatctgcacagatgcctttagattcttcagaaggggcttatggt
gatactaaagttgatttatctaatgttcggagcatgcaacctaaaactgtcagaagtgga
cgtaacagttcttttgatggtggatcctctaaacatggtagccgatgcagagcagttgct
gatggatcatctgttgtgagtgatgggaaaccagggaagagaggcaatgcttctgcctat
ggttctcatgagaaacaagtctgggtacagaaatctagttcaggttcttag
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