Gossypium hirsutum (upland cotton): 107947042
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Entry
107947042 CDS
T04793
Name
(RefSeq) serine/arginine-rich splicing factor SR45a isoform X1
KO
K12897
transformer-2 protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107947042
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107947042
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107947042
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107947042
Spliceosome [BR:
ghi03041
]
Common components
Common spliceosomal components
SR proteins
107947042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
107947042
NCBI-ProteinID:
XP_016737078
UniProt:
A0A1U8NGJ8
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All DBs
Position
D12:complement(58804253..58807004)
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AA seq
197 aa
AA seq
DB search
MSYSREGRSVSPGRRRQPRSGRSRSRSRSRESQDASNPGNNLYVTGLSTRVTAVDLEKYF
SNEGKVLECHLVTDPHTKESRGFAFVTMETVEGAERCIKYLNRSVLEGRLITVEKAKRSR
GRTPTPGRYQGVRDRRGQGHRRSRSYSPRQNDRDYHSRGRRGRSRSRSPYGRRRDDPDLH
RRHRERSLSGDGSGHRR
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgtcatattcaagggaaggaaggtcggtttctccgggaagaagacgacagcctaggtct
ggtaggagtcgctccaggtctaggagccgtgaatctcaggatgcatccaatccaggaaat
aacttatatgttactgggttatccacaagagttactgctgttgatctcgagaagtatttc
agcaatgaaggaaaggttttggagtgccatctagttactgatccacacaccaaagaatct
cgtggatttgctttcgtgaccatggaaactgttgagggtgcagagcgctgcatcaagtat
ctgaatcgttcagtgcttgaaggtcgattaatcactgtggaaaaggcaaaaaggtcccga
ggaagaacaccgacacctgggaggtatcaaggtgtgcgagatagaagaggacaaggccac
agacggtctcgtagctattcacctcgacaaaatgacagagattatcattcaaggggtaga
cgagggagatcccgttctcgttctccatatggtaggagaagagatgatcctgacttacat
aggaggcacagagagcgctccttgtctggtgatggcagtggtcatcgtagatga
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