Gossypium hirsutum (upland cotton): 107951608
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Entry
107951608 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107951608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107951608
03009 Ribosome biogenesis [BR:
ghi03009
]
107951608
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107951608
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107951608
Complex B
107951608
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107951608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
107951608
NCBI-ProteinID:
XP_016742196
UniProt:
A0A1U8NT89
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All DBs
Position
A02:complement(8970107..8977725)
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AA seq
1158 aa
AA seq
DB search
MTTAEAAAANLGPRYAPEDPTLPKPWKGLIDGTTGLLYYWNPETNVTQYERPTILPPPLP
PGPPPAVSTPKLTPTSVAHSAQPNGAVAQMGQVQVVQGAKQLGQQMSQLAQQQGQIVGQQ
QGSMVAQVTDQQGAQQSGPKMGHQGQFIPQQHGPQAMQHPNQQMVSQIGQQTMQHQNSQM
AQPQGHQYAHQHLQYMAYQQSVLPQGQQSSQQLAPHGAQHQGQQYPNREDYKAAVPKKED
VDFQLGSQTGFSPAQFQQMGTSSQNHSAGTNSVQTPPAGLYSGQQQQFTGSSVNMQQPTS
MAHSQQTGTDLVQRQQGHRFQNQMGPSVMQSNMPPPGLNTGYEDKLHGRSGNDYYFSGSK
DGQMMGPQQPSLSAIPMETRMSGLPHQNVPGHGGGFNAIGGHAVHNIYGHAGPPYPINAL
MRPSFVASADANHLSPADAYRKQHEVTATGDNVPAPFIRFEDTGFPPEILREIHSAGFSS
PTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFMLLRQRRNNPLNGPTVLVLAPTR
ELATQIQEEAIKFGRSSRVSCTCLYGGAPKANQLKELDRGADIVVATPGRLNDILEMKKI
EFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNP
VQVNIGSVDELAANKSITQYVEVVPQMEKERRLEQILQAQERGSKVIIFCSTKRLCDQLA
RSLGRNFGAVAFHGDKSQNERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINFDFP
TGIEDYVHRIGRTGRAGATGVSFTFFSEQDWKYAPDLIQVLERANQHVPPEVREIASRGG
PGFGKDRGGMNRFNSPSGSGGRWDSGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGFGGR
GGMRDSGFSGPGGRGDPFSGRGNRGGRGFGGPAGGHVGWGRNERSLHDQYNSFDGRGRGR
GRGRGRFDNRRGIGDRSRGRSYSRSPDMVRTWRRSRSRSRSGSRSWSRSSRSRSRSRSRS
RSRSRSRSWSRGRSRSYSRSPGRGRSRSHSRGRRSRSRSHSYERKDVAKRAFDSPPGSNE
HNLQQKDVAKRAFDSPPPSNEQNFEQKDVAKQAFDSPGAQGNSVPENNSIEPLQTVGISE
LPQGEEGAGEVHESVTEP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgcagaagcagcagcagccaatcttggcccacggtatgcaccggaagatcct
actcttccgaaaccttggaaggggctgatcgatggaacaactggcctcctgtattactgg
aatcctgagaccaatgtcacgcagtatgaaaggccgaccattttgcctccacccctgcca
ccgggccctcctcctgcagtttccacacctaagctaactccaacctcagttgcccactct
gcacaacctaatggtgcggtggcacagatgggccaggtgcaagttgtccagggtgcaaaa
cagctggggcagcaaatgagccaattagctcaacagcaaggacaaatagttgggcagcaa
cagggttcaatggtagcacaggttacggatcagcagggtgcacaacaatcaggtccaaaa
atgggacatcaggggcagtttatcccgcagcaacatgggccacaggcaatgcaacaccca
aatcagcaaatggtgtctcaaattgggcagcagacaatgcagcatcaaaactcacaaatg
gcacaaccacaaggacatcaatatgcacatcagcatttgcagtatatggcatatcaacaa
agtgtgcttccacagggccaacaaagttctcagcagctcgctcctcatggtgcacaacac
cagggtcagcagtatccaaatcgagaagattataaagcggcagttccgaaaaaggaggat
gttgattttcagctagggagccaaactgggttttctcccgctcaatttcaacagatgggc
acatcttctcagaaccactctgctggaactaattcagttcagactccaccggcaggttta
tattcaggtcaacaacagcagtttacaggctcctctgtcaatatgcaacagccaacctct
atggctcattcacagcaaactggaacagatttggttcagcggcagcagggtcataggttt
cagaatcagatgggcccatccgttatgcagtctaatatgcctcctcctggtttaaatact
ggttatgaagataaactacatggcagatctggaaatgattactactttagtggtagcaaa
gatgggcaaatgatgggtccacagcagccctcactttctgccatacccatggagacaagg
atgagtggtctgccacatcaaaatgtgcctggtcatggtgggggatttaatgctattgga
ggtcatgcggtgcataacatctatggtcatgctggtcccccttatcccattaatgccttg
atgaggccttcatttgttgcatctgcagatgctaatcatctgtctccagctgatgcatat
cgtaagcaacatgaagtcacagcaacgggagacaacgttccagcaccattcataagattt
gaagatactggtttccctccagagatactgagagagattcattctgctggtttttcctct
cccactccaatacaagcacaaacatggcctattgcactacaaagtcgggacattgtggct
attgctaaaactggttctggtaaaacattgggctacttgattcccgctttcatgcttttg
aggcaacggcgtaacaaccctctgaatggcccaacagtgttggttttggctccaactcgc
gagcttgctacacaaatacaggaagaagccataaaatttggccgatcttcaagagtctct
tgcacgtgtttgtatggtggggctccaaaggctaatcaattgaaagagttagatcgagga
gctgatatagtagtggcaactcctggtcggctaaatgacatccttgaaatgaagaaaatt
gagtttggacaggtgtcactccttgttcttgatgaagcagatcgaatgcttgacatgggt
tttgagccccagattcgcaagattgttaatgagatacctcctcgcagacaaactctgatg
tacactgcaacatggcccaaggaggttagaaaaatagcaggtgacctccttgtcaatcct
gtccaggtgaacattggcagtgttgatgagcttgctgccaataagtctatcacccagtat
gttgaggttgttccccagatggagaaggagaggcgcctggagcagattctccaagctcaa
gagcgcggttcaaaggttattattttttgctccactaagaggttgtgtgaccagcttgct
cgtagtcttggacgcaactttggagctgttgctttccatggagataaatctcaaaatgaa
agggactgggtgttgagtcagttccgaactgggaaatccccgatattggttgccactgat
gttgctgctcgtgggcttgacatcaaagatataagggtggttatcaattttgatttccct
actggcattgaggactatgttcaccgaattggaaggactggaagagctggtgcaactggg
gtgtccttcacctttttctctgagcaggactggaagtatgcccctgacttgattcaagtt
ctggagagagctaaccagcatgtgcctcctgaggtgcgagagatagcttctcgtggtggg
cctggttttgggaaggatcgaggtggaatgaatagatttaattctcctagtggcagtggt
gggcgctgggattctggaggccgtggtggaatgagggatggaggctttggtggccgtggt
ggaatgagggatgggggctttggtggacgtggtggcatgagagatggttttggcggtcgt
ggtggtatgagggatagtggcttcagtggtcctggagggagaggtgacccattttctgga
cgtggaaaccgaggaggacgtggatttggtggccctgctggtggtcatgttggttggggc
aggaatgagagaagcttgcatgatcaatataatagttttgacgggcgaggacgtggtcgt
ggaagaggacggggacgatttgataacagaagaggcattggtgatagaagtagaggcaga
agctatagccgaagtcctgacatggttcgaacttggcgccgtagccgtagccgtagccgc
agtgggagtcggagttggagtaggagtagtaggagtaggagtaggagtaggagtaggagt
cgaagcagaagcagaagcaggagctggtcacgtggtcgtagccgcagctacagccgtagt
cctggtcgagggcggagccgaagccatagccgtggccgccgcagtcgaagccgtagtcac
agctatgagcggaaggatgttgcaaagcgggcatttgattctcctcctggttccaacgaa
cataacttgcaacagaaggatgttgcgaagcgagcatttgattctcctcctccttccaac
gaacagaacttcgagcagaaggatgttgcaaagcaggcatttgattcacctggtgcacaa
ggcaattcagtgcctgaaaataattctatagaaccgttacaaacagttggaatttctgag
ctacctcaaggagaggagggtgcaggagaagtgcatgaatcagtgactgagccataa
DBGET
integrated database retrieval system
