Gossypium hirsutum (upland cotton): 107958508
Help
Entry
107958508 CDS
T04793
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107958508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107958508
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107958508
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Step II factors
107958508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
ABC_tran
TsaE
AAA_16
Sigma54_activ_2
T2SSE
PhoH
AAA_33
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
107958508
NCBI-ProteinID:
XP_040969252
LinkDB
All DBs
Position
A05:complement(10755534..10760194)
Genome browser
AA seq
1189 aa
AA seq
DB search
MASSPAQDDALKKLEYLSLVSKVSSELESHVGFSDKVLAEFITDMGRHSETVDEFDVKLK
ENGAELPDYFVRTLLTIIHAILPPKPKAEKESKKAIAGDGKKSKFKALAIADDKDRAKEL
EKEIEMETRDLKKVEGRDRDRGRDRYRRDSDRVRDRDRDKDRSRHRDRYTEDADDDRMDY
GSRGRNRDRTRHNRDGDEDNRDYRNRGRIRDRGNVEGDEGGDKRSNGRYKDNEPELYKVY
KGRVSRVMDSGCFVQLNELRGKEGLVHVSQMASRRIANAKDVVKRDQDVYVKVISVSGQK
LSLSMRDVDQNTGKDLLPLKKTSDDDALRINPSGGKEWPVMRTGLSGIRIVEDEDTAPSR
RPLKRMSSPERWEAKQLIASGVLRLDEYPMYDEDGDGMLYEEEGAEEELEIEMNEDEPAF
LQGQTRYSVDLSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRP
WEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYK
LKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKR
VAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDEDLSQYSVIMLDEAHE
RTIHTDVLFGLLKQLLRRRADLRLIVTSATLDAEKFSGYFFDCSIFSIPGRTFPVEILYT
KQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELII
LPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVVDPGFAKQNVYNPKQ
GLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTT
LTMKAMGINDLLSFDFMDPPAPQALLSAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPL
SKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVY
EAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFMTIRKAITA
GFFFHAARKDPQEGYRTVVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVID
PKWLVELAPRFFKQADPSKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatctcctgcccaagacgatgcgctgaagaaacttgaatatctctccctcgtc
tccaaggtcagctccgaactcgagagccatgtagggttttccgataaggttttggccgaa
ttcatcaccgacatgggtcgccactccgagaccgttgacgaattcgatgtcaagctgaaa
gaaaacggtgccgagttacctgattacttcgtccgtacacttcttactatcatccacgct
attctgcctccaaaacccaaggctgagaaggaatccaagaaggcaatcgccggtgacggt
aagaaatctaaatttaaagctttagcgattgcagatgataaagatagagcaaaagaactt
gagaaggaaattgaaatggagacacgagacctaaaaaaagtagagggtagggatagggac
agaggcagagacagatataggagggatagcgatagggtcagagacagagatagagataaa
gataggagtaggcatagagatagatatacggaggatgctgatgatgataggatggattat
ggcagtcggggaagaaatagggatcgaacccgacataatagagatggtgatgaggataat
agagattataggaataggggcaggatcagggaccggggtaatgtggaaggtgatgaaggt
ggggataagaggagtaatggaaggtacaaggataatgagcctgagttgtataaggtatac
aaggggagagtttcaagagtgatggattcaggttgttttgtgcagttgaatgagttaagg
ggaaaggagggtttggttcatgtttcccagatggctagtaggaggattgccaatgcaaaa
gatgttgtgaaacgggatcaggacgtttatgtgaaggtaatttcagtttcaggtcagaag
ttgagtttgtctatgagggatgttgatcagaatactggtaaggacttgcttccgttgaag
aaaacttcagatgatgatgctcttaggattaatccttcaggggggaaagagtggcccgtg
atgagaactggcctttcagggattaggattgttgaggatgaggatactgccccttcacgt
aggccattgaagagaatgagttcgccagagaggtgggaagccaaacaattgattgcttct
ggtgttctgagactagatgagtatcccatgtatgatgaagatggagatggaatgctttat
gaagaggaaggtgctgaggaagaacttgagatcgaaatgaatgaggatgaacctgccttt
ttgcaagggcagactaggtactctgtggatctctcaccagtaaaaatatttaagaatcca
gaagggtccttgagtcgcgctgctgctctccagtctgcacttattaaggaacggcgagaa
gttcgggagcagcagcagaggacaatgcttgattcaattcccaaggatcttaatcgtcct
tgggaagacccaatgccagagacaggtgagaggcatcttgcgcaggagcttagaggtgtt
ggattgtcagcatatgatatgcctgaatggaagaaggatgcttatggtaaagctttgact
tttgggcagaggtctaaactttccatccaagagcagaggcagagcttgcccatttataaa
ttgaaaaaagagcttgttcaggctgtgcatgataatcaggtactcgtggtcattggtgag
actggttcaggtaagactacccaggtaacccagtatcttgctgaggctgggtacactaca
aagggtaagattggatgcactcaacctcgaagggtggctgcaatgtctgtggcgaagagg
gtagctgaggaatttggttgtcggctaggggaggaagttggctatgctattcgttttgaa
gattgcactggaccggatactgtcataaaatacatgactgatggtatgcttcttagggag
attttgattgacgaggatctctctcagtactctgtcattatgcttgatgaagctcatgag
cgaacgattcacactgatgtcctttttgggttactgaagcaacttctgagacggagagcc
gatcttcgtctgattgttacgtctgctacactggatgcagagaagttttcagggtatttc
tttgactgcagtattttcagcattcccggtagaacatttcctgtagagatactctataca
aaacagcctgaaagtgactacctagatgctgctcttataacagtcctacagatacacttg
actgaacctgaaggtgacattcttctcttcttgactggtcaggaggaaattgattttgca
tgccagtctctttatgagaggatgaaaggactaggtaaaaatgttcctgaattgattatt
ttaccggtttatagtgcccttcctagtgagatgcagtctaggatttttgatcctgcccct
cctgggaaaaggaaggtggtagtggcaaccaatattgccgaggcttctttaactatagat
ggaatattctatgtggttgatcctggttttgcaaaacaaaatgtctacaatccgaagcaa
gggcttgattccctggtcataacaccaatttcacaagcatcggccaaacaacgtgctggg
cgggctgggcgtactggacctggaaaatgctaccgcttgtatactgagagtgcatatcga
aatgagatgtcccctacatcgattccagagatccaaaggattaaccttggcatgacaaca
ctaacaatgaaagcaatgggcataaatgatctcctttcttttgattttatggatccacct
gcaccacaagctctcctttctgccatggagcaattatacagtttaggagctttagacgag
gaggggcttttgactaaattgggtagaaaaatggcagaatttcctcttgatccaccacta
tcgaagatgttactggctagtgtggacctcgggtgtagtgatgagatattgacaattatt
gcaatgatccaaactggtaacatcttctacaggccaagggaaaagcaagctcaagctgat
cagaagagggccaagtttttccagcctgagggagaccatttgactctacttgctgtatat
gaggcttggaaagctaagaacttttctgggccttggtgttttgaaaattttgttcagtct
cgatctttacggagggcacaggatgttagaaaacagcttctaagcatcatggataagtac
aaactggacgtagtgagtgcaggaaagaactttatgacgatcaggaaagctatcacagca
gggttcttcttccatgctgcaaggaaggacccacaggaaggatatagaacagtggtggag
aaccagcctgtttatattcacccaagtagcgcccttttccagagacaaccggactgggtg
atctaccatgagctggtaatgactacaaaggagtacatgcgagaggtgacagtgatagat
cccaaatggctggttgaacttgcgcctagattcttcaaacaggcagatcccagcaagatg
agcaagcgcaagcgtcaagaacgtattgagcctctttatgatagatatcatgaacctaat
tcttggcgtctcagtaaacgacgagcttga
DBGET
integrated database retrieval system