Gossypium hirsutum (upland cotton): 107962023
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Entry
107962023 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine-rich SC35-like splicing factor SCL30
KO
K12900
serine/arginine-rich splicing factor 10
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107962023
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107962023
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107962023
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107962023
Spliceosome [BR:
ghi03041
]
Common components
Common spliceosomal components
SR proteins
107962023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107962023
NCBI-ProteinID:
XP_016753723
UniProt:
A0A1U8PTN4
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All DBs
Position
A06:complement(121459470..121462488)
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AA seq
285 aa
AA seq
DB search
MRRYSPQYYSPPRRGYGGRERSXPRRGYGGGGGGSGGGGGGGGGYGRRREQNNGSLLVRN
IPLDCRPEELRIPFERFGLVRDVYIPKDYYTGAPRGFAFVQFVDSYDAAEAQWRMNGKIF
GGREISVVVAAESRKRPEEMRHKARQRGPSGYGGRSSYYGRSRSRSASPTRSPHRPSGSR
GRYRSRSYSPAPRRRGNYSVSPDRRHEDHPRSPRGPPQGCGGDYNPGPYSPGYENAGGNG
YGEKSAYESEEAPRAARRPSPPGRASRSPPGSRSRSADPSPRRSR
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgaggagatacagtcctcaatactatagtccaccaaggagaggttacggaggcagagaa
aggagtnccccaaggaggggctatggtggtggtggtggtggtagtggtggcggcggcggc
ggtggaggagggtatgggagaaggagggagcagaataatggaagccttttggttagaaac
attcctttggattgcagacctgaagaacttcgaattccattcgagagattcggacttgtt
cgagatgtgtatattccgaaagattactatacaggggctcctcgagggtttgcgtttgtg
cagtttgtcgattcttatgatgctgccgaagctcaatggcgcatgaatgggaagatattt
ggtgggagagagatatctgtcgttgttgctgcggaatcaaggaaaaggccagaggagatg
cggcataaagcaaggcaaagaggaccatcgggatatgggggacgatcatcttattatggg
cgttcccggtctcgttcagcatctccaacgcgctcccctcaccgtccttcaggttctaga
ggccgatatcgctcaaggtcgtactcccctgctccgagacgaagaggaaactattcagtt
tcaccagatagaagacatgaagaccatccaagatccccaagaggtcctccacaaggttgt
ggcggtgattacaatcccggaccatattctccaggatatgaaaatgctggtggaaatggc
tatggcgagaagtctgcatacgaatctgaggaagcaccacgggctgcacggaggccatcg
ccacctggtagagcatcaaggtcaccgcctgggtccaggtctaggtcggcagacccatca
cctaggcgtagccgttaa
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