Gossypium hirsutum (upland cotton): 121209632
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Entry
121209632 CDS
T04793
Name
(RefSeq) uncharacterized PE-PGRS family protein PE_PGRS54-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
ghi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121209632
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121209632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121209632
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
121209632
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
121209632
NCBI-ProteinID:
XP_040936530
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Position
A11:3196788..3200490
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AA seq
718 aa
AA seq
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MDEGEGGDQMDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNEDLGF
RNEETKNSANNVVNNNDIGEKVGGSPMDAAPEPGVSNPGVADGVGRGDSRVSHESQGFRS
GAICDVKGPSAGSDSGGNGLRVELERASSKLNDMAAEQSRNNINNNLSGVGGMAQQGHGV
GNMGSVENESLMRHGGVGAGNVNGGGVSGPMIGNGGGNVGVAGAVPGLGPGPGVGASGGG
SGGGGSGTILFVGDLHWWTTDAELESELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPA
AATACKEGMNGHIFNGRPCVVAFASPFTVKKMGEAQLNRNQQMAQSALSQARRGPNDAGG
KTVGNNIQTGGNYQGGDNNRGYGRGNLGRGNAQGMGNRAPGGPMRNRPGGMGGRGIMGNG
GNGFGQGIGATPPLLHPQSMMGQGFGPAFGGAMGRMGGYGGFPGALTPPFSGMLNSFPPV
GGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTGGVDGPNMGMWSDPSMGGWGGDEHGGGRA
GESSFGEEADHQYGEATHDRGGWQNPMKEKDRASEKEWSGSSERRYRDDREPGYDRDMPG
EKDTGHGHDWPERGHQDDRDTGRERDRERDRDRERSRDRDRNRDRERDRDRDRDRHREDK
DRYADHHRYRDREPEHDDDWDRGRSSRTHSKSRLSQEEEHRSRSRDADYGKRRRLTSD
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggagagggaggggatcagatggatcagttccacagaaacgaagcaatctca
gctgttgctgacgagggtttcctaggtgaagaagatgatgattatgaggatctttataat
gatgttaatgttggcgaagggtttcttcaatctttaagaaaaaacgaagatttagggttt
aggaatgaggaaactaagaatagtgcaaataatgttgttaataataatgatattggtgag
aaagttggtgggtcaccaatggatgctgcacctgaacctggtgtttcaaatcctggggtt
gcggatggtgttggaagaggggattctagggtttctcatgagagtcaagggtttagaagt
ggtgctatttgtgatgtgaagggacctagtgcgggtagcgatagtggtggaaatgggctt
agggttgaattagagcgagcatcatctaagttgaatgatatggctgcagagcagagtagg
aataatatcaacaataatttatctggtgtaggtggtatggcacaacagggacacggtgta
gggaatatggggagtgttgagaatgagagcttaatgaggcatggaggagtaggggctggg
aatgtgaatggtggtggtgtcagtggtcctatgattgggaatggtggtggaaatgtgggt
gttgctggtgctgttcctggtcttggtcctggtcctggtgttggtgcaagtggaggtgga
agtggtggtggaggtagtgggacgatattgtttgttggagatctccattggtggacaaca
gatgctgaactagagtcagagttgtgcaagtatgggcccgtgaaagaagtcaagtttttt
gatgagaaagcaagtgggaagtcaaaaggatattgtcaggttgagttttacgatccagcc
gcagccacagcgtgtaaggagggaatgaatgggcatatttttaatggaaggccttgtgtt
gttgcctttgcatcaccatttactgttaagaaaatgggagaagctcaattaaatcggaac
caacagatggcacagtctgctctttcacaagctaggaggggcccaaatgacgctggaggc
aagactgttggtaataacattcaaactggtgggaattatcaaggtggagataataataga
ggttatgggagagggaatttgggaagaggcaatgctcaggggatgggaaatagagctcca
ggtggtcctatgaggaacaggcctggtgggatgggtggtagaggtattatgggaaatggt
ggaaatggttttggacaaggtattggtgcaacacctcctctcttgcatccacagtctatg
atgggtcaaggttttggtcctgcttttggtggagccatggggagaatgggtggttatgga
ggctttcctggtgctctaacgcctccattttctgggatgttaaattcgttccctcctgtt
gggggagttggtttgcctggagtggcccctcatgttaaccctgcattttttggaagaggt
atgcccatgaacggtatgggaatgatgcccacaggtggtgtagatgggcctaatatggga
atgtggtcagatcccagcatgggaggatggggtggtgatgagcatggtggtgggagagct
ggagagtctagttttggggaggaagctgaccatcaatatggtgaggctacgcatgataga
ggaggttggcaaaatccgatgaaagaaaaagatagagcttcagaaaaggagtggtctgga
tcatctgaaagaaggtatcgtgatgatagagaaccgggatatgatagggacatgcctggg
gagaaggatactggccatggtcacgattggccagaaagagggcaccaggacgatagagac
actggtcgagaacgtgatagggagcgtgacagggatagggaacgctctcgagatcgtgac
cgcaaccgtgatagggaacgtgatcgagacagggatcgggatcgacatagggaagacaaa
gacagatatgcagatcatcataggtacagggaccgtgagcctgagcatgatgatgattgg
gataggggacggtcatcaagaactcacagtaagtcacgattatcacaggaggaggagcat
cgctcaagatctagagatgctgattatgggaagaggcgacgacttacctcagactga
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