Gossypium hirsutum (upland cotton): 121212618
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Entry
121212618 CDS
T04793
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121212618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121212618
Enzymes [BR:
ghi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121212618
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121212618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
121212618
NCBI-ProteinID:
XP_040941693
LinkDB
All DBs
Position
A13:complement(109159558..109171094)
Genome browser
AA seq
1182 aa
AA seq
DB search
MTEEIKLSVLVSLFTWIQRSRPSAKKRSKFRKFLDTFCKPSDYFSAMRLILPSLDRERGT
YGLKESVLAICLIDALGLSRDSADALRLVNWRKGGANTGANAGNFALVAAEILQRRQGTV
SGGLTIKELNELLDRLASAESRAEKTAIFATLINKTNAQEMKWVIMIILKDLKLGITEKS
IFQEFHPDAEDLFNVTCDLKLVCEKLRDPTQRHKRQDIEVGKAVRPQLALRVRDPAAAWK
KLHGKEVVVECKFDGDRIQIHKNGTDIHYYSRNFLDHSEYQHGMSNIITQNILVDRCILD
GEMLVWDSTLNQFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
EILQKVVKPLKGRLEILVPNGGLNANRPPGEPCWSCIAHSVNDVERFFKETIENRDEGIV
IKDLNSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRP
DPNAYPRRFISFCRVGTGLTDDDLETVAKKLKPYFRKYEYPKKMQPSFYQVTNHSKERPD
VWIESPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGTTQKGTEQENQPDSKTKHKAHARKADRKNVSIVPSHFIRTDTSCVKGETLIFSNLM
FYFVNVPPTYSLDSFHKMVVEHGGRFSMNLNNSVTHCVAAESKGIKYQAAKLHGDIIHYS
WALDCCSQKKLIPLQPKYFLFLSESSKTKLQQEVDQYFDPYYWDLDLADIKQLLNNIQRS
ENSKTIDYYRAKYCPNDKWSLFHGCSVYFYSSAESLKADWQVLLNLALRRLKLEILMGGG
KISENLSHATHLVVLSVPGLDVDFDSLIKSCSFEEKNLVWKKGLHVVKSQWLENCIERGQ
KLREDQYSLKPNDFEETNFVESKLDQNLEKSKPDFNGVQNKGTSTSPESKTKQRGGKDHP
EKSISAVTPSHGNRKRRPASKNTKKGKTIVTRAQRVPRRRGKMSVKIDEDGSEESGSDDK
TNEEIGKGEGNNTECYRRAGRENFEFHQNQAAEENVGINWPNKAHDTVMCEANNDQPGNK
AEKFDHMELDEGKYGHEISTSEKLEVMVDPVQAMLLDMIPSLGIKHVETTNSVVQNEKPH
MDNDADIRVVEDEKLDADFIPQPQKKKKVSYKDVAGELLKDW
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagaaataaagttaagcgttttagtgagtttattcacatggatccagaggagc
cgaccgtcggcgaagaagcggtctaagtttcgtaaattcctcgacaccttttgtaaacca
tccgattacttcagtgctatgcggcttatccttccttcactcgatcgagaacgtggaact
tacggcctcaaggagtctgttctcgcaatttgcctcatcgatgctctcggcttgtcgagg
gattctgctgatgctctacgtcttgtcaattggcgcaaaggtggagctaatactggtgct
aatgctgggaactttgctcttgttgctgctgagattttgcagcgtaggcaaggtacggtt
tccgggggacttactatcaaggagttgaatgagttgcttgatcgattggcttctgctgaa
agcagggctgagaagactgcaatctttgctactttgattaataagacaaatgcacaggaa
atgaagtgggttatcatgattattctaaaagatctcaagttgggaattactgagaagagc
atatttcaagaatttcatccagatgccgaagacttgtttaatgtcacgtgtgacctaaaa
ttggtttgtgaaaagttaagggatcctactcagcgtcataagcgtcaggacattgaggtt
ggaaaggctgtacgcccacaactagctttgagagttcgtgatccagctgctgcatggaaa
aagcttcatggtaaggaggtagttgttgagtgtaaatttgatggcgatcgcatccaaatc
cacaaaaatggaacagacatacactactactccaggaattttcttgatcattctgaatat
cagcatgggatgtcaaatattattacccaaaatattttggttgataggtgtatacttgat
ggagaaatgttagtttgggattccacgttaaatcagtttgctgagttcgggtcaaatcag
gaaatagccaaagcagcaaaagatggccttgatagtgacagacagttatgttatgttgca
tttgacattctttatgttggggatacaagtgttattcaccaaagtttgaaggaacggcat
gagattcttcaaaaagttgtgaagcctttgaaggggcgcttagagattttagtgcctaat
ggtggtctcaatgcaaatcgtcctcctggggaaccttgttggtcatgtattgctcacagt
gtgaatgatgttgagagatttttcaaggaaacaattgaaaatagggatgaaggaattgta
ataaaagaccttaattccaagtgggaaccaagtgatagaagtgggaagtggttgaagttg
aagcctgattacattcgggctggttctgacttggatgttctcattattggagggtattac
ggctctgggcgtcgaggaggagaggtagctcaattcttagtaggcctagcagatcgtcca
gaccccaatgcttaccccaggcgatttatatccttctgcagggttggtactgggttgact
gacgatgacttggaaactgttgcaaagaaattgaagccttattttaggaaatatgaatat
ccgaagaagatgcaaccaagtttttatcaagttacaaatcactcgaaagagagacctgat
gtttggattgaaagcccagagaaatcaatcattctttctatcaccagtgatatcaggact
ataaggtctgaggtatttgctgcgccgtacagcctgagatttccacgtattgatagagtg
agatatgacaagccttggcatgagtgccttgatgtgcaatcatttgtagaactggtgcat
tcaagtaatggtaccactcaaaaagggacagaacaggaaaaccagcctgatagtaaaaca
aagcacaaggcacatgctagaaaggcagacagaaagaatgtctccattgttccttctcat
tttattcggactgacacgtcctgcgtaaagggagaaaccttaatattttcaaatcttatg
ttttactttgttaatgtgcctccgacatattctcttgattcatttcacaaaatggttgtg
gagcatgggggaaggttctcaatgaatttgaacaattcagttactcattgtgttgcagct
gaaagcaaagggatcaagtatcaggcagcaaagctgcatggggacattatccattactct
tgggccttggattgttgctcacaaaagaagcttattcctttgcagccaaagtatttcctt
tttctttctgaatcatcaaagacgaaattacagcaagaagttgatcaatactttgaccct
tactattgggaccttgaccttgcggatatcaaacagcttttaaacaatatccaaagatct
gaaaactccaagacaattgactattacagagcgaagtactgtccaaatgataaatggtcc
ctgtttcatggctgctctgtttacttctactcttcagctgagtctctgaaagctgattgg
caagtcttgttgaatctagcactaaggaggttaaagcttgaaattttaatgggtggcggc
aaaataagtgagaatctcagccatgctacccatttggtagtcctctcagtaccgggattg
gatgtggactttgactctcttattaagagttgttcttttgaagagaaaaatcttgtgtgg
aaaaaggggcttcatgttgtcaaatctcagtggttggaaaattgcatagagcggggacag
aagttgcgagaagaccaatatagcttgaaacccaatgatttcgaagaaacaaacttcgta
gaaagcaaattggaccaaaatctggaaaaatccaagccagatttcaacggtgttcagaac
aagggtacatctacttcacccgaaagtaaaacaaaacagagaggaggcaaagatcacccc
gaaaaatcaatttcagcggttacacctagtcacgggaacaggaagagaagacctgctagc
aagaacacaaagaaaggaaaaacaattgtaacccgagctcagagagtaccaagacgtcgt
ggaaagatgtctgttaagattgatgaagatgggtctgaagaaagtggttctgatgacaaa
acaaatgaggagatagggaagggtgaagggaataatactgagtgctacagaagggctggt
agggaaaatttcgagtttcatcaaaatcaagcagcagaagaaaatgtcggcataaactgg
cctaataaagctcatgataccgtgatgtgtgaagcaaataatgaccaacccggcaacaaa
gccgagaagttcgaccatatggaactagatgaagggaaatacggccatgagatttcaacc
tcagaaaagctagaagttatggtcgatccggttcaggccatgttactagacatgatccca
agccttggaataaagcatgtcgaaaccacaaattctgttgtccaaaacgagaaacctcac
atggataacgatgcagacattcgtgtcgtagaggatgagaaactagatgccgattttatt
ccacagccacaaaagaaaaagaaagtgagttacaaggatgttgccggtgaactactcaag
gattggtaa
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integrated database retrieval system
