Gossypium hirsutum (upland cotton): 121213755
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Entry
121213755 CDS
T04793
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121213755
03015 mRNA surveillance pathway
121213755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121213755
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121213755
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
121213755
NCBI-ProteinID:
XP_040942712
LinkDB
All DBs
Position
D01:3080248..3094940
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AA seq
428 aa
AA seq
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MAKPTRGRRSPSVSGSGSSSRSRSRSRSRSRSYSGSDSKSSSRSRSVSRSRSASPSSSRS
RSRSLSSSPSRSGSSRSRSPPQRRSATDASRRGRSPPPQSKKSSPAPRKTSPIRESLVLY
VDSLSRNVNEGHLREIFGNFGEVVNVDLAMDRALNLPRGFGYVEFKTRADAEKALLYMDG
AQIDGNVVRAKFTLPPRPKASPPPKPIPSATTKRDAPKSDNVNADTEKDGPKRPREPSPQ
RKPPPSPRRRSPVGRRGGSPRRPPESPRRRPDSPVRRRGETPPRRRPASPARGRSPLSPP
RRLRSPARTSPRRMRGSPIRRRSPPPRRRSPPRRPRSPPRRSPFNRRRSPSPIRRRSRSP
IRRPLRSRSRSISPPRGRGPAARRGRSSSYSRSPSPRKAGRRVSRSRSPRRPLRGRRSSS
SSSPPRRP
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccgacgagaggccgccgttctccttctgtctccggctccggttcctcttcc
cgttctcgttcacggtctaggtctcgctcccgctcttattccggttcagactccaagtcc
agttctcgctctcgctcagtgtcccgctccagatctgcttccccgtctagctctcgttct
cgctccagatctttatcctcttctccttctcgtagcggtagctctcgaagtcgcagtcct
cctcagcgtcgaagtgcgactgatgcatctaggcgaggtcgttcccctcctccgcaatct
aaaaaatcatctcctgctccgaggaagacttctcccatccgtgagtctctggttctttac
gtcgactcactgagcaggaatgttaatgaaggtcatctaagagaaatattcggtaatttc
ggtgaagttgtaaatgtggatcttgcaatggaccgtgctcttaatcttccaagaggattt
ggatatgttgaattcaagacaagagcagatgctgaaaaagctctactttacatggatggt
gcccagattgatggcaatgtagtaagagcgaaattcacacttcctccacgaccaaaagct
tctccgccaccaaagccaattccttctgctactactaaaagagatgctcccaaatctgat
aatgtcaatgctgataccgagaaggatgggccaaaacgaccacgggaaccttctcctcaa
cggaagcccccaccttcaccacgaaggagatctcctgtgggccgaagaggtggatctcct
agacgaccaccagagtctcctcgtcggcgacctgattctccggttcgtcgtcgtggtgaa
acacctcctaggcgccgacctgcctctcctgctagaggtcgttctccattgtctcctccg
aggcgacttcgatctccagcaaggacctctccgcgtaggatgcgtggcagtccaatccga
aggcgttctccacccccaaggcgccgttcacctcccagacgacctcgtagccctccaaga
aggtctcccttcaatcgtagacgtagcccttctccaattcgtaggcggagccgttctcca
attcgcagacctcttcgttctcgttcaaggtcaatctcaccaccaagaggcagaggacct
gcggcacgacgtgggaggtcatcatcctattcccgatcacccagtccccgaaaggcagga
cgaagggtttcaaggagtcgcagtcctaggaggccattgagaggaagaagaagcagcagc
agtagttcgcctcctcggaggccgtag
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