KEGG   Gossypium hirsutum (upland cotton): 121216209
Entry
121216209         CDS       T04793                                 
Name
(RefSeq) splicing factor U2af large subunit B-like isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121216209
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    121216209
Spliceosome [BR:ghi03041]
 Complex A
  U2 snRNP components
   U2 related factors
    121216209
 Complex B
    121216209
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_7
Other DBs
NCBI-GeneID: 121216209
NCBI-ProteinID: XP_040947511
LinkDB
Position
D04:958399..963077
AA seq 571 aa
MTDCEETRHQGNGDNLENSYGGGSSPQPRSDDQNDSKSQHGSRDYERESSRSREKEREKV
RDKEREKDRDHHRDRDRDREKDRDRDRHRRDRHRDRSRERSERRDRGRDRDDDDYYRSRD
YDRRRDYDRDRKDRPGRSSRSHSRGRSERRSKSRSRSRSRSRSKSKRVSGFDMAPPTSAM
LAAGAAAAATAGQIPGTSPTIPGVFPSIFPLATTQPFGALPVMPVQAMTQQATRHARRVY
VGGLSPTANEQSVATFFSEVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNA
MALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTQGFSGGLEGPDRIF
VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG
IKMGDKTLTVRRANQGATQPKPEQESILQHAQQQIALQRLILQPQGVPTKVVCLTQALNV
DDLRDDEEYEDIVEDMRQEGGKYGELVNVVIPRPNPNGEPSPGVGKVFLEYSDVEGSKKA
QVAMNGRKFGGNQVIAVYYPESKFAERDYDG
NT seq 1716 nt   +upstreamnt  +downstreamnt
atgactgattgcgaagaaacgcggcatcaaggaaacggcgataacctcgaaaacagttac
ggcggagggtcttctcctcagcctcgttctgacgatcaaaatgattctaaatctcagcat
ggatctcgggattatgagagagagtcctctagaagtagggaaaaggagagagagaaagtg
cgtgacaaggaaagggaaaaggatcgtgatcaccatagggatagggatagggaccgagaa
aaggatcgtgatcgggaccgccatcgcagagatcgtcatagggatcgtagtagggagcgt
agtgagaggagggatcggggaagagacagggatgatgacgattattaccgaagtcgagac
tatgacagaagaagggactatgacagagacaggaaggacaggcctgggcgcagctctcga
tcccattcaaggggtagatctgaacgcagatcaaagtcaagatctcgttctcgctcacgc
tcacgctcaaagagtaaaagagttagtggctttgacatggcccctccaacttcagcaatg
ttagctgctggtgctgcagcagctgctactgcaggtcagattcctgggactagcccgacc
atacctggagtattccctagcatctttcctcttgcaaccactcagccttttggtgctctg
cctgttatgccagttcaggcaatgactcagcaggctactaggcatgctcgtcgggtctat
gttggagggctttctcctacagccaatgaacagtctgttgcgacattcttcagcgaagtc
atggctgcaattggtggaaacactgctggtccaggtgatgctgttgttaacgtctacata
aaccatgaaaagaagtttgcttttgtagagatgagatctgtcgaggaggccagtaatgca
atggctttggatgggataatattcgagggagcacctgtgaaggtgaggaggcctagtgac
tacaatccctcgcttgctgcaactcttggcccaagccagcccagtcccaatcttaatcta
gctgctgtgggtctaactcagggcttttctggtggacttgagggtccagaccgcatattt
gttggtgggcttccttactacttcacagaagcacagatccgcgagctattggagtccttt
gggcctcttcgagggtttgatctggtaaaagatagagaaactggaaactcgaaaggctat
gccttttgtgtttatcaagacttgtcagtcacagatatagcttgtgctgctctaaatgga
attaaaatgggtgataaaactctcaccgttaggcgagcaaaccagggtgctacccagcct
aaacctgagcaagagagtatactccagcacgcacaacagcagattgctttgcagaggctt
attttgcaaccacaaggggtgcctacgaaggttgtttgcttgactcaagcacttaatgtg
gatgatctcagggatgatgaggagtatgaagacattgtggaagacatgaggcaagagggt
ggaaaatatggtgaattagtgaatgttgtcattccacgcccaaatccaaatggagaacca
tccccaggcgtagggaaggtatttctggagtactcagatgtcgaaggttccaaaaaagcc
caagtggctatgaatggtcggaaatttggtgggaatcaagttattgctgtctactatccg
gagagcaagtttgcagagagggactacgatggctaa

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