Gossypium hirsutum (upland cotton): 121222221
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Entry
121222221 CDS
T04793
Name
(RefSeq) exopolygalacturonase-like isoform X1
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121222221
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
121222221
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
FAP
Motif
Other DBs
NCBI-GeneID:
121222221
NCBI-ProteinID:
XP_040958304
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Position
D10:51102141..51104062
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AA seq
455 aa
AA seq
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MMAFSLRNIVAFLALFHASIVVATLPSCQTCGSPEPSPPAPEPEAFPPEPEVPEPYPPEL
APYPEPDQSPEPSEAPIDDDGVFDVTNYGAVADGGTECSSAFSAAWHAACDYPGNSTFYI
PEGTFLVGPISFRGPCYNDRSPNVEIRGTLFALSSLSSFKSSYWISFKNLQGLTLIGGPE
YGKLDGQGAVEAWKEPSCEKSARCKKLITSIDFINVSHATISNITLSNSKGFHLGLHGSK
NIKIYNVKIIAPEDSPNTDGIHVSNSSNISIFSSTIGVGDDCVSIGPGSKNVSVSNIRCG
PGHGISVGSLGKYKNEKDVVGINVRNCTINGTENGIRMKTWPGDRPSNAYNMTFEDIVMV
NVSNPIIIDQEYCPSHKCKSNEPSMVKLKDIFIKNINGTYSTKSAVIFLCSSEAPCENVQ
LVNINLNYLVPNSPRQGRLNIKGFLNGLQVINSRF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgatggcatttagtttgagaaacatagtagcttttttagcattgtttcatgcaagtatt
gtggtggcaacattgccttcttgccaaacctgtggctcacctgaaccatctcctccagca
cctgaacccgaagcttttccacccgaaccggaagtacccgaaccttatccccctgaactg
gctccatatccggaacctgatcagtctccggaaccaagtgaggcaccaattgatgatgat
ggtgtttttgatgtcaccaactatggagcggtggctgatggtgggaccgaatgtagctcg
gcattctctgcagcatggcatgcagcgtgtgattatccggggaactctaccttttacata
ccagaaggaacattcttggtcggtccgatctcatttcgtgggccctgctataacgataga
tcgcctaacgtcgagatcaggggaacattatttgctctaagtagccttagttcattcaag
tcctcctattggatttcattcaaaaatctccaagggctcactcttattgggggacccgaa
tacggcaaactcgatggtcaaggagccgtagaggcctggaaagagcctagctgtgagaaa
tcagcaagatgtaagaaattaatcacatcaatagattttataaatgtttcacatgcaacc
atcagcaatatcacattgtcaaacagcaagggcttccacttaggtctgcatggaagcaag
aacattaaaatctacaatgtcaaaattattgctcctgaggatagcccaaacactgatggc
atccatgtcagtaactcctctaacataagcattttctcttcgacaatcggagtcggtgat
gattgtgtctccataggacccggtagcaagaatgtctcggtttccaacatccgatgcggt
ccaggccatggaataagtgtgggcagccttggcaagtataaaaacgagaaggatgtggtc
gggatcaacgtccgaaactgcacgataaatggcacagaaaacggtattcggatgaagaca
tggcccggagaccgtccaagcaatgcttacaacatgacatttgaagacattgtgatggtc
aatgtctccaaccccataatcatagaccaagaatattgtccttcacataaatgcaagagt
aatgaaccttcaatggtgaagcttaaagacatattcataaagaacatcaatggcacctac
agcaccaaatctgcagtaatctttctgtgcagctcagaggctccttgtgaaaacgttcag
cttgttaacataaatctcaactatttagtgcccaacagtcctcgccaaggtcgcttgaac
attaaggggtttcttaatggcttacaagttattaattctaggttttag
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