Gossypium hirsutum (upland cotton): 121230889
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Entry
121230889 CDS
T04793
Name
(RefSeq) homeobox-DDT domain protein RLT1-like isoform X1
Organism
ghi
Gossypium hirsutum (upland cotton)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WSD
DDT
HARE-HTH
Homeodomain
WHIM1
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121230889
NCBI-ProteinID:
XP_040972348
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All DBs
Position
A06:complement(127452413..127461895)
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AA seq
1750 aa
AA seq
DB search
MEAGSEGENNQINNPNKNVSSPNEGNVKPKRQMKTPFQLEALEKAYALETYPSEATRAEL
SEKLGLTDRQLQMWFCHRRLKEKKDTPTKKPRKVAALPPESPIDELRAGPGPDYGSGSGS
GSSPNMDTRKLGGSSSRGMTEDVQTVRRYYESQQSIMELRAIACVEAQLGEPLRDDGPML
GMEFDPLPPDAFGAIPEPHNRPGHPYESKVYERNDGRSSKVAARAFHEYQFLPEHSSLRS
DAYGLVSQSHFHESPVSGVRGRASPFVHGEEPLSRIHGIQGHGSRARVLPQQGIIPSSSH
VADDSLAERESFTNGRNAPSICHPVLGSEDSYMLSAEQSLNNDADPRIDRKRKVSSLSDE
TRIAKEVEAHENRIRKELEKLDHKRRKSEERMRKEMERLERERRKEEERLMREKQREEER
TQREQKREMERRQKFLQKEYLRAEKKRQKEELRREREEERRRVAREKATARKIAKESMDL
LEDEQLELMELAAARKGIYSIIHLEHDTLQNLESFRDSLSVFPPKSVQLKGPFDIQPWID
SEENVGNLLMAWRFLITFADILRLWPFTLDEFVQAFHDYDSRLLGEIHVAILRSIIKDIE
DVARTPATGLGMNQYCSANPEGGHLQIVEGAYSWGFDIRNWQHHLNPLTWPEIFRQLAIS
AGFGPQLKKQNATWTYTGDNDEGKGCADVVSTLRNGSAAENAFALMREKGLLLPRRSRHR
LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDGKLF
ERIAPSTYCVRPAYRKDPADAEAILATARRKIRQFENGFLGGEDADEVERDEVERDDVER
DEESECDVDEDPEVDDIATPSNANKDADYPKNEVNTCLGSKNFHASADDELDVPAEFDKD
FPPFPSNTVKVDNDPSNTGQYVASEENGTGNPDQQNIEIDESESGESWIQGLSEGEYSHL
SVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDKSRLKEECIIKMD
FPPVMGIKTEAQLPNSAVEGSRSPFPVADNKNDEASPSIPEDQKPLLCSQNVQNDLNSYP
AERALVLQDASMGPENFCAQQHGYASKRSRSQLKSYIAHRAEEMYVYRSLPLGQDRRRNR
YWQFVASASKNDPCSGQIFVELHDRKWRLIDSEEAFDALLASLDARGIRESHLRIMLRKI
ESSFKENVRRNLHSARAMGRSGNSSENEASEIDSGPDFSGSFDSPRNGICGLNSDASETL
PCFKIQLGRNENERKSAMKRYQDFQRWMWNECYNSSTLCAMKYEKKRCTQLLAVCDTCLG
SHMPEDVHCSYCHQTFRAFNNNFNFYDHEIRCKENRKLDNKDKHTLDSSLPMGINLLKSF
CALVEVSIPPEALDSMWAEGQRKMWGRKLNASSSADELLKLLTQLESAIKRDYLSSNFET
TKELLGSSLQSENDSSTVSVLPWIPQTTPAVALRLLELDSSIMYVKPEKVEPPENREARA
SYIKLPSRTSLFIKNKELGLKELDQDEPMKENFTDLSNSKRSSYKRGRGAREQGSGRKWQ
RKGSGSKSDAGKQSVRENNNLSFQLKQQSQRTGQSSGHGRRTVRKRAESRAANSTTMARM
SDVVKPKADAISVRDLDEEWRAERFGMMATVNPPDSNSTEEESDDDGQGEGYGQGNWELD
LNGASNGWSREPMEASYEEDDAYEDDNGIEQVVEEESDGDLEMSDASDDVPNETRNDDVL
DSADSEDYSD
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggaggctggttcagaaggtgagaataatcagatcaataatccgaataagaatgttagt
agtcccaatgaaggcaacgttaagcctaaacgacaaatgaagactccgtttcaactcgaa
gctctggagaaagcttatgctctggagacttatccatcggaagcgacgcgagcggaattg
tcggagaaattgggattaacggatcggcagttacagatgtggttttgtcaccggagattg
aaagaaaagaaggatactcctacgaaaaaaccgcgaaaagttgctgcgttaccgccagaa
tctccaatcgatgagttgcgggccgggccgggcccggactatggatcagggtcaggttcg
gggtcaagtccaaatatggacacaaggaagttggggggaagctcttctcgagggatgacg
gaggatgtgcagacagttaggaggtattatgagtcacaacagtcgataatggagctcaga
gcaattgcttgtgtggaggcacagttgggagagccattgcgagatgatggacctatgctc
ggcatggagttcgatccattgcctcctgatgcttttggagcaattcccgagccacataat
aggcctggacatccttacgagagcaaagtatacgagcgaaatgatggccggtcaagcaaa
gttgctgcaagggcttttcatgagtatcagtttcttccagagcattcaagtcttagatct
gatgcatatggacttgttagtcagtctcattttcatgaatccccagtcagtggtgtgagg
ggtagagcttcaccgtttgtgcatggagaggaaccattgtccaggattcatggcattcaa
ggtcatggatctcgagctcgcgtgttacctcagcaaggaataattccttcatcatctcat
gtggctgatgattctcttgcagaaagggaatcatttacaaatgggagaaatgctccgtct
atttgccatccggtgttggggtctgaagattcatatatgctgtctgctgagcaatccttg
aataatgatgctgatccacggatcgataggaaacgcaaggtgtctagcttgagtgatgaa
actagaattgcaaaggaagttgaggcacatgagaacaggattcgtaaagagcttgagaaa
ctagaccataaaaggcgaaagagtgaagagaggatgaggaaagaaatggaaaggcttgaa
cgtgaaagaaggaaggaagaagagaggttgatgcgtgagaagcagcgggaagaagagaga
acacaacgagagcagaaacgtgaaatggaaagaagacaaaagtttttgcagaaagaatac
ttgagagctgagaaaaagagacaaaaggaagagctgcgaagagagagagaggaggagaga
cgtagagttgccagggaaaaggcaactgcacggaaaattgctaaagagtctatggatctt
cttgaagatgaacagctagaactcatggagttggctgctgctaggaagggaatatactca
attattcatctagaacatgataccttgcaaaatcttgagtcatttagagattcattaagc
gtgttcccgcccaagtctgtgcaattgaaaggaccatttgacattcaaccgtggattgat
tcagaggagaatgttgggaatcttctcatggcatggagatttttgattacttttgctgat
attctcagactatggccttttactcttgatgagtttgtccaagcttttcatgactatgat
tcaaggttgttgggtgagattcatgttgctattttgagatcaataataaaagatattgaa
gatgttgcaagaacaccagcaactggattagggatgaatcagtactgttctgccaaccct
gaaggtggacaccttcagattgttgaaggggcatattcctggggttttgacatccggaat
tggcagcatcacttgaatccactgacatggcctgaaattttccggcaattagcaatctct
gctggttttggacctcagttgaagaaacaaaatgcaacatggacatacacgggtgataat
gatgagggtaaaggttgtgctgatgtagtttctactctacgcaatggttcagcagctgag
aatgcatttgcattgatgcgagagaagggtctgttacttcctaggagatcgaggcatcgt
ttgacacctggaactgtcaaatttgcagcttttcatgttctttcgctggagggaagcaaa
ggattaacagttctagaacttgcagataagattcagaaatctggacttcgggaccttaca
acaagcaagactccggaggcttctatttcagttgctttgacaagggatggaaagctcttt
gaaagaatagctccttcaacttattgtgtacgacctgcctataggaaagatcccgctgat
gcagaggccatactagcaactgcaaggagaaagattcggcaatttgagaatggatttcta
ggtggagaagatgctgatgaagttgaaagagatgaggtggaaagagatgatgttgaaaga
gatgaagaatctgaatgtgatgttgatgaggatcctgaagttgatgatatagctactcct
tcaaatgcaaacaaagatgctgactaccctaagaatgaagtaaatacttgtttaggaagt
aaaaatttccatgcctcagctgatgatgaattggatgttccggctgaattcgataaggat
ttcccacctttcccttcaaatactgtgaaggttgacaatgatccaagtaatactggacaa
tatgttgccagtgaggagaatggaacaggcaatcctgatcaacagaatattgaaattgat
gaaagtgagtctggtgagtcgtggattcagggtctttcagaaggtgaatattctcatctt
agtgtcgaggagcgccttaatgcccttgttgccttaattggtattgcaaatgaagggaac
tctattcgtgctgtgcttgaggatcgtctggaagcagcaaatgctcttaaaaagcaaatg
tgggctgaggctcagcttgacaaaagtcgtctgaaggaagaatgtataattaaaatggat
tttccacctgtcatgggaatcaagactgaagctcaactgcctaattctgccgtggaaggc
agccgaagtccatttcctgttgctgataataaaaatgatgaggcatctccaagcattcca
gaagaccaaaaacccttgctatgttcacaaaatgttcaaaatgacctcaatagttatcct
gctgaaagggccttggtacttcaagatgcctccatgggtccagaaaacttctgtgctcag
cagcatggatatgcttcgaaaagatcacgctcacagttgaaatcatacatagcccacaga
gcggaagagatgtatgtatacaggtccttacctcttggccaagatcgtaggcgaaataga
tactggcagtttgttgcttctgcttctaaaaatgatccttgttccggccagatattcgtt
gaactacatgacagaaaatggaggctgattgattctgaagaggcttttgatgctctcttg
gcatctttggatgcacgaggaatcagggaatctcatttacggataatgttgcgaaagatt
gaatcctccttcaaagaaaatgttcgtaggaacttgcactctgccagggctatgggccga
agtggaaactcctctgagaatgaagcttctgaaattgattccggtcctgattttagtggc
agttttgacagtcctcgtaatgggatctgtgggttgaattctgatgcatcagagacatta
ccttgtttcaaaattcagcttgggagaaatgaaaatgagagaaagtcggccatgaaaagg
tatcaagatttccagaggtggatgtggaatgaatgttacaattcctcgactttgtgtgcc
atgaaatatgaaaagaagagatgtacgcagctattggctgtttgtgatacttgccttggc
tctcatatgccggaggatgtgcattgtagttactgccaccagacgtttcgcgcctttaac
aataattttaatttctatgatcatgagattcggtgcaaagaaaacaggaagctagacaac
aaggataaacatactctcgattcttctctccccatgggaatcaacttactaaagtccttt
tgtgctctagttgaggtatctattccgccagaagcccttgattcaatgtgggcggagggc
cagcgaaagatgtggggcaggaagcttaatgcatcttcttccgcagatgaactcctaaag
ctgttgacacagcttgagagtgccataaaacgagattatttatcgtccaactttgaaaca
acaaaggagttattgggttctagtcttcagtcggagaatgattcttctactgtttctgtg
cttccatggataccccaaaccactccagctgtagctttaaggcttttggagcttgattcg
tccatcatgtatgtaaaaccagagaaagtcgagcctccggagaacagggaagctagagca
tcatatataaagcttccttcgagaacctctcttttcatcaagaataaagagcttggatta
aaagagctagaccaagatgagcctatgaaagaaaactttaccgacctgagtaacagtaaa
cgcagcagctataaacggggaagaggcgctcgtgagcaaggatctggtagaaagtggcag
aggaaaggttctggttccaaatctgatgccggcaagcaaagtgttagagaaaacaataat
ttaagtttccagctcaaacaacagagccaaagaactggtcagagttctggacatggccgt
cgaacagttagaaagagagctgaaagtagagctgctaatagtacaaccatggctcggatg
agtgatgtggttaaaccaaaggctgatgcgatatctgtacgagatttggatgaagaatgg
agggctgaaagatttgggatgatggcaactgtaaatcctcctgatagtaacagtacggaa
gaggagtcagatgacgatgggcaaggtgaaggatacggacaaggaaactgggagctagat
cttaatggtgcctctaatgggtggagtcgagaaccgatggaagctagctatgaagaggat
gatgcttatgaagatgataatggcattgaacaggtggtagaagaagaatccgatggcgat
ttggagatgagtgatgcatcagatgatgtcccaaatgaaactagaaacgatgatgtcttg
gactcggcagattccgaagattatagtgattaa
DBGET
integrated database retrieval system
