Gossypium hirsutum (upland cotton): 121230890
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Entry
121230890 CDS
T04793
Name
(RefSeq) homeobox-DDT domain protein RLT1-like isoform X1
Organism
ghi
Gossypium hirsutum (upland cotton)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WSD
DDT
HARE-HTH
Homeodomain
WHIM1
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121230890
NCBI-ProteinID:
XP_040972352
LinkDB
All DBs
Position
A06:127467826..127478072
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AA seq
1750 aa
AA seq
DB search
MEAGSEGENNQISNPNKNISSSNEGNAKPKRQMKTPFQLEALEKAYALETYPSEATRAEL
SEKLGLSDRQLQMWFCHRRLKEKKDTPTKKQRKGAALPPESPVDELRAMPGPDYGSGSGS
GSSPYMDTRKLGVSSSRGMMEDAPAVRRYYESQQSILELRAIACVETQLGEPLRDDGPML
GIEFDPLPPDAFGAIPEPHNRTGHPYESKVFERHDGRSSKAAARAFHEYQFLPEHSSIRS
DAYGLVTQSHFHESPVSGSRGRATSFVHGDEPLSRIHGIQGQGSRALVLPQQGIIPASSH
VADDSLAERESFTNGRNAPTICHPVLGSEDSYMLSAEQTLNNDAEPRIDRKRKVSSLSDE
NRIAREVEAHENRIRKELEKLEHKRRKSEERMRKEMERHERERRKEEERLMREKQREEER
TQREQKREMERRQKFLQKEYLRAEKKRQKEELRREREEERRRVAREKATARKIAKESMDL
LEDEQLELMELAAARKGMHSIIHLDHDTLQNLESFRDSLSVFPPKSVQLKRPFDIQPWID
SEENVGNLFMAWRFLITFADILRLWPFTLDEFVQAFHDYDSRLLGEIHVALLRSIIKDIE
DVARTPATGLGMNQYCAANPEGGHLQIVEGAYSWGFDIRNWQHHLNPLTWPEIFRQLAIS
AGFGPQLKKQNATWTYTGDNEEGKGCTDVVSTLRNGSAAENAFALMREKGLLLPRRSRHR
LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDAKLF
ERIAPSTYCVRPAYRKDPADAEAILATARKKIRQFENGFLGVEDADEVERDEVERDDVER
DEDSECDVDEDPEVDDIATPSNANKDADYRKDEVNTCLGSKKVLASADDDLDVPAEFDKD
FPSFPSNTVKVDNDPSNTGQYVASEENGTGNPDQQNIEIDESKSGESWIQGLSEGEYSHL
SVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDKSRLKEECIIKMD
FPPVMGIKTEAQLPNSAVEGSRSPFPVADNKNDEASPSIPEDQKPLLCSQNVQNDLNSYP
AERALVVQDASMGPENFSAQQHGYASKRSRSQLKSYIAHRAEEMYVYRSLPLGQDRRRNR
YWQFVASASKNDPCSGRIFVELHDGNWRLIDSEEAFDALLASLDVRGIRESHLRIMLQKI
ESSFKENVRRNLHSARAMGRSGSSSENEVSEIDSSPDFTGSFDSPRSGICGLNSDALEAL
PAFKIQLGRNENERKSAMKRYQDFQRWMWNECYNSSTLCAMKYEKKRCTQLLAVCDTCLG
SHMPEDVHCSYCHQTFRAFNNNFNFYEHEIRCKENRKLDNKDKHTLDSSLPMGINLLKSF
CAVVEVSIPPEALDSMWTEGQRKMWGRKLNASSSANELLKLLTQLESAIKRDYLSSNFET
TRDLLGSSFQSENDSSTDSVLPWIPQITPAVALRLLELDSSIMYVKQEKVEPPENREARA
SYIKLPSRTSLFIKNKELELKELDQDEPMKEENFADLSNSKRSSYKRGRGAREQGSGRKW
QRKASGSKSDIGKQSARENNNLSFHLKQQSQRTGQSSGRGRRTVRKRAERRVANSTIVTQ
MGDMVKPKSNTVSLRDLDEEWRTERFGMMETVNPPDSNSTEESDDNGQGEGYEQGNWELD
LNGASNGWNREPIEASYEDDDAYEDDNGFEQMLEEESEGDLEMSDASDDVPNETRNDDGS
DSADSEDYSD
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggaggctggttcagaaggtgagaataatcagatcagtaatccgaataagaacattagt
agttccaatgaaggtaacgctaagcctaaacgacagatgaagactccgtttcaactcgaa
gctctggagaaagcttatgctctggagacttatccatcggaagcgacgcgagcggaatta
tcggagaaattgggattatcggatcggcagttacagatgtggttttgtcaccggagattg
aaagaaaagaaggatactcctacgaaaaaacagcgaaaaggtgctgctttaccaccggaa
tctccggtcgatgagttgcgggccatgccaggtccggattatggatcggggtcaggttcg
gggtccagtccgtatatggacacaaggaagttgggggtaagctcttctcggggaatgatg
gaggatgcgccggcagttaggaggtattatgagtcacagcagtcaatactggagctccga
gcaattgcttgtgtggagacacagttgggggagccattgcgagatgatggacctatgctt
ggcattgagttcgatccattgcctcccgatgcattcggagcaattcctgaaccacataat
aggactggacatccttacgagagcaaagtatttgagcgacatgatggccggtcaagcaaa
gctgctgcaagggcttttcatgagtatcagtttcttccagagcattcaagtattagatct
gatgcatatggacttgttactcagtctcattttcatgaatccccggtcagtggttcgagg
ggtagagctacatcatttgtgcatggagatgaaccattgtccaggattcatggcattcaa
ggtcaaggatctcgggctcttgtgttacctcagcaaggaataattcctgcatcatctcat
gtggctgatgattctcttgcagaaagggaatcgtttacgaatgggagaaatgctccgact
atttgccatccagtgttgggatctgaagattcatatatgctgtctgctgagcaaaccttg
aataatgatgctgaaccacggatcgataggaaacgcaaggtgtctagtttgagtgatgaa
aatagaattgcaagggaagttgaggcacatgagaacaggattcgtaaagagcttgagaaa
ttagagcataaaaggcgaaagagtgaagagaggatgcggaaagaaatggaaaggcatgaa
cgtgaaagaaggaaggaagaagagaggttgatgcgtgagaagcagcgggaagaagagaga
acacaacgagagcagaaacgtgaaatggaaagaagacaaaagtttttgcagaaagaatac
ttaagagctgagaaaaaaagacaaaaggaggagcttcgcagagagagagaggaggagaga
cgtagagttgccagggaaaaggcaactgcacggaaaattgctaaagagtccatggatctt
cttgaagatgaacaactagaactcatggagttggctgctgctaggaagggaatgcactca
attatccatcttgatcatgataccttgcaaaatcttgagtcatttagagattctttaagc
gtgttcccccccaagtcggtgcaattgaaaagaccatttgacattcaaccatggattgat
tcagaggagaatgttgggaatcttttcatggcatggagatttttgattacttttgctgat
attctcagactatggccttttactcttgacgagtttgtccaagcttttcatgactatgat
tcaaggttgttgggtgagattcatgttgctcttttgagatcaataataaaagatattgaa
gatgttgcaagaacaccagcaactggattagggatgaatcagtactgtgctgccaaccct
gaaggcggacaccttcagattgttgaaggggcatattcctggggttttgacatccggaat
tggcagcatcacttgaatccactgacatggcctgaaattttccggcaattagcaatctct
gctggttttggacctcagttgaagaagcaaaatgcaacgtggacctacactggtgataat
gaagagggtaaaggttgtacagatgttgtctctactctacgcaatggttcagcagctgag
aatgcatttgcattgatgcgagagaaaggtctgttacttcctagaagatcgaggcatcgt
ttgacacctggaactgtcaaatttgcagcttttcatgttctctcactggagggaagcaaa
ggattaacagttctagaacttgcagataagattcagaaatctggacttcgggaccttaca
acgagcaagacgccagaggcttctatttcagttgctttgacaagggatgcaaagcttttt
gaaagaatagctccttcaacttattgtgtacgacctgcctataggaaagatcctgctgat
gcagaggccatactagcaacagcaaggaaaaagattcggcaatttgagaatggattttta
ggtgtagaagatgctgatgaagttgaaagagatgaggtggaaagagatgatgttgagaga
gatgaagactctgaatgtgatgttgatgaggatcccgaagttgatgatatagctactcct
tcaaatgcaaacaaagatgctgactaccgtaaggatgaagtaaatacttgtttaggaagt
aaaaaagtccttgcttcagctgatgatgacttggatgttccagctgaatttgacaaggat
tttccatctttcccttcaaatactgtgaaggttgacaatgatccaagtaatacgggacaa
tatgttgccagtgaggaaaatggaacaggcaatcctgatcaacagaatattgaaattgat
gaaagcaagtctggtgagtcgtggattcagggtctttcagaaggcgaatattctcatctt
agtgttgaggagcgccttaatgcccttgttgccttaattggtattgcaaatgaagggaac
tctattcgtgctgtgcttgaggatcgtctggaagctgcaaatgctcttaaaaagcaaatg
tgggctgaggctcagctggacaaaagtcgtctgaaggaagaatgtataattaaaatggat
tttccacctgtcatgggaatcaagactgaagctcaactgcctaattctgctgtggaaggc
agccgaagtccatttcctgttgctgataataaaaatgatgaggcatctccaagcattccg
gaagaccaaaaacccttgctatgttcacaaaatgttcagaatgacctcaatagttatcct
gctgaaagggcattggtagttcaagatgcctccatgggtccagaaaacttctctgctcag
cagcatggatatgcttcgaaaagatcacgctcacagttgaaatcatacatagcccacaga
gcagaagagatgtatgtatacaggtctttacctcttggccaagatcgtagacgtaataga
tactggcagtttgtcgcttctgcttctaaaaatgatccttgttctggccggatatttgtt
gaactacatgacggaaattggaggctgattgattctgaagaggcctttgatgctctcttg
gcatctttggatgtacgaggaatcagggaatcccatttacggataatgttgcaaaagatt
gaatcctccttcaaagaaaacgtgcgtaggaacttgcactctgccagagctatgggccga
agtggaagctcttctgaaaatgaagtttctgaaatagattccagtcctgattttactggc
agttttgacagtcctcgtagtgggatctgtgggttgaattctgatgcattggaggcatta
cctgctttcaaaattcagcttgggagaaacgaaaatgagagaaagtcggccatgaaaagg
tatcaagatttccagaggtggatgtggaacgaatgttacaattcctcaactttgtgtgcc
atgaaatatgaaaagaagagatgtacacagctattggctgtttgtgatacatgccttggc
tctcatatgccagaggatgtccattgtagttactgccaccagacgtttcgagcctttaac
aataattttaatttctatgaacatgagattcggtgcaaagaaaacaggaagctagacaac
aaggacaaacatactctcgattcttctctccccatgggaatcaacttactaaagtccttt
tgtgctgtagttgaggtatctattcccccagaagcccttgattcaatgtggacagagggc
caacgaaagatgtggggcaggaagcttaatgcatcttcttctgcaaatgaactgctaaag
ctgttgacgcagcttgagagtgccataaagcgagattatttatcttccaacttcgagaca
acgagggacttattgggttctagttttcagtcagagaatgattcttctactgattcagtg
cttccatggataccccaaatcactccagctgtagctttaaggcttttggagcttgattca
tccatcatgtatgtaaagcaggagaaagttgaacctccagagaacagggaagctagagca
tcatatataaagcttccttcaagaacctctcttttcatcaagaataaagagcttgaatta
aaagaactagaccaagatgagcctatgaaagaagaaaactttgctgacctgagtaacagt
aaacgcagcagctataaacggggaagaggcgctcgtgaacaaggatctggtagaaagtgg
cagaggaaagcatctggttccaaatccgatattggcaagcaaagtgctagagaaaacaat
aatttaagtttccacctcaaacaacagagccaaagaaccggtcagagttctggacgtggc
cgccgaacagttagaaagagagctgaaaggagagttgctaacagtacaattgtaactcag
atgggtgatatggttaaacctaagtcaaatacggtatccttacgagacttggatgaagaa
tggaggactgaaagattcgggatgatggaaacagtaaatccccccgatagtaacagtaca
gaagaatcagatgacaatggacaaggcgaaggatatgaacaaggaaactgggagctagac
cttaacggtgcctctaatgggtggaatcgagaaccgatcgaagctagttatgaagatgac
gatgcttatgaagatgataatggctttgaacagatgctagaagaagaatccgaaggcgat
ttggagatgagtgatgcatcagatgatgtcccgaatgaaactagaaacgatgatggctca
gactcggcagattccgaagattatagtgattaa
DBGET
integrated database retrieval system
