Gordonia hongkongensis: MVF96_16195
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Entry
MVF96_16195 CDS
T08182
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ghn
Gordonia hongkongensis
Pathway
ghn03030
DNA replication
ghn03410
Base excision repair
ghn03420
Nucleotide excision repair
ghn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MVF96_16195 (ligA)
03410 Base excision repair
MVF96_16195 (ligA)
03420 Nucleotide excision repair
MVF96_16195 (ligA)
03430 Mismatch repair
MVF96_16195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghn03032
]
MVF96_16195 (ligA)
03400 DNA repair and recombination proteins [BR:
ghn03400
]
MVF96_16195 (ligA)
Enzymes [BR:
ghn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MVF96_16195 (ligA)
DNA replication proteins [BR:
ghn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MVF96_16195 (ligA)
DNA repair and recombination proteins [BR:
ghn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MVF96_16195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MVF96_16195 (ligA)
MMR (mismatch excision repair)
DNA ligase
MVF96_16195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MVF96_16195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UPG66992
LinkDB
All DBs
Position
complement(3568496..3570586)
Genome browser
AA seq
696 aa
AA seq
DB search
MADTTESGQPVTEQSGPEADLREEWTALAEEIREHQFRYYVKDAPVITDGEFDLLLRRLQ
ALEDAHPELAAADSPTKLVGGGFSTAFSAVDHLERMMSLDNVFDHDEMRAWVDRVVADAG
ARADFLCELKIDGVALALVYRNGVLERGVTRGDGRTGEDVSLNARTIDDIPMRLTESAEY
AIPEVLEVRGEVFFRVEDFEALNASLVAEGKPPFANPRNSAAGSLRQKNPQVTARRKLRM
ICHGIGHTEGWRPESLHDAYLALGAWGLPVSTHTTKVSGADEIIDKIAYWGEHRHDVEHE
IDGIVVKVDDVTVQRRLGSTSRAPRWAIAYKYPPEEATTKLSDIQVNVGRTGRVTPFAVL
EPVLVAGSTVSRATLHNGSEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTEVEFE
MPELCPACETPLRPEKESDADLRCPNQESCPAQLRERLFHLAGRGSFDIEALGYEAASAL
LSAGVLTNEGDLFSLTAEDLIRTDLFTTKAGALSANGKRLLANLDKAKDVALWRVLVGLS
IRHVGPTAARALATEFGSLEAIEAADIDQLAGVEGLGMTLAQSIHDWFTVDWHRDIVEKW
RAAGVSMEDERDESIPRTLEGKTIVVTGSLVDFSRDGAKEAILQRGGKASGSVSKKTDYV
VVGDSPGTKADKAEQLGVPVLDEDAFKKLLETGSPE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtggcagatacaacggagtcgggtcagccggtcaccgagcagtcggggccggaggcggac
ctgcgtgaggagtggaccgcgctcgccgaggagatccgcgagcaccagttccgctactac
gtgaaggacgcgccggtcatcaccgacggcgagttcgatctgctcctccgacgcctgcag
gcgctcgaggacgcgcaccccgaactcgcggccgccgactcacccaccaagctcgtcggg
ggcggcttctccacggcgttctccgcggtggaccacctcgagcgaatgatgtcgctggac
aacgtcttcgaccacgacgagatgcgcgcctgggtcgaccgcgtggtcgccgacgccggc
gcccgggccgacttcctctgcgagctcaagatcgacggcgtggccctggcgctggtctac
cggaacggggttctcgagcgaggtgtcacccgtggcgacggacgcaccggtgaggacgtc
tctctgaacgcgcgcaccatcgatgacatcccgatgcgcctgaccgagtccgcggagtac
gcgattcccgaggtcctcgaggtccgtggcgaggtcttcttccgggtggaggacttcgag
gcgctcaacgcctcgctcgtggcggagggcaagccgccgttcgcgaatccgcgcaactcg
gccgccggctcgctgcggcagaagaatccgcaggtcacggcccgtcgcaagctgcggatg
atctgtcacgggatcgggcacacggagggctggcgaccggagtcgttgcacgacgcctac
ctggcgctcggggcctggggtctgccggtgtcgacccacaccaccaaggtgtccggcgcc
gacgagatcatcgacaagatcgcctactggggcgagcaccgtcacgacgtcgagcacgag
atcgacggcatcgtggtcaaggtcgacgacgtgaccgtgcagcgccgcctcggttccacc
tcgcgggcgccgcggtgggcgatcgcctacaagtacccgcccgaggaagccaccaccaaa
ctctccgacatccaggtcaacgtcggacgcacgggccgggtcacacccttcgcagttctc
gaacccgtgctcgtcgccgggtccacggtctcgcgcgcgaccctgcacaacggttcggag
gtcaagcgcaagggtgtgctgatcggtgacaccgtcaccatccgcaaggcgggggacgtg
atccccgaagtcctcgggccggtcgtcgatctccgcgacggcaccgaggtggagttcgag
atgcccgaactgtgcccggcctgcgagacgccgctgcggccggagaaggagagcgacgcc
gacctccgctgtccgaaccaggagagttgtccggctcagttgcgcgagcggctcttccac
ctggccggtcggggttctttcgacatcgaggcgctaggctacgaggccgcgtcggccctg
ctgtcggcgggggtgctcaccaacgagggtgacctcttctcgctgacggccgaggacctg
atccgcacggatctgttcaccaccaaggcgggggcgctctcggccaacggcaagcggttg
ctggcgaacctcgacaaggccaaggacgtggcgctgtggcgcgtgctggtcgggctgtcg
atccgccatgtcgggcccaccgccgcccgcgccctcgccaccgaattcggttccctcgag
gccatcgaggccgccgacatcgaccagctcgccggcgtagaggggttgggaatgaccctc
gcccagtcgatccacgactggttcaccgtcgactggcatcgagacatcgtcgagaagtgg
cgcgccgcaggcgtttccatggaagacgagcgcgacgagtcgatcccgcggaccctcgag
ggcaagacgatcgtcgtgacgggttcgctggtggacttctcccgtgacggggccaaggag
gcgatcctgcaacgcggcggcaaggcgtcgggttcggtgtcgaagaagaccgactacgtg
gtggtgggggattcgccgggcaccaaggccgacaaggccgaacagctcggcgtgccggtg
ctcgacgaggacgcgttcaagaagttgctggagaccggcagccccgagtga
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