Gordonia iterans: C6V83_03655
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Entry
C6V83_03655 CDS
T05370
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
git
Gordonia iterans
Pathway
git00550
Peptidoglycan biosynthesis
git01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
git00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
C6V83_03655 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
git01002
]
C6V83_03655 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
git01011
]
C6V83_03655 (dacB)
Enzymes [BR:
git01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
C6V83_03655 (dacB)
Peptidases and inhibitors [BR:
git01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
C6V83_03655 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
git01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
C6V83_03655 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Peptidase_S11
Motif
Other DBs
NCBI-ProteinID:
AVL99516
UniProt:
A0A2S0KCV7
LinkDB
All DBs
Position
802360..803703
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AA seq
447 aa
AA seq
DB search
MLATALILVLVAALALGGVLGYNWYSLKPEPVPVGTPPRPAAVTVDPSIRPVSPDAPMPT
KAGIAAALREGLRNRDLGKLTGMVSDPVTGEVLWSKDPDDPRTPASNAKILTAAAVLEQL
DHGSRLTTEVVQGDDGQVILVGALDPTLSVQDPGSDTFYTDAPRISDLAEQIRKSGVEVT
SVAVAPSSVEGPAMERTWSEEDIEGGDIAPITSLMVDGARQRPLEEYSPRSAEPDVDAGR
ALAEQLGVSTRVTQAQPRPSARTLASVESAPLSTRVGDMMRLSDNILAETLAIELSEAMG
GPASIAGGTEAIVKVLRDKGFDVSGVVLRDASGLSTANKVPARLLDRLVSAAAGDAHPKL
RPLLDTFPVAAGTGTLATRFPPGNPGAGWVRAKTGTLTGVSSLTGIVQTVDGRVLAFALM
SGGTSPADARPALDDLVGALRECGCRG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttgctggccaccgcgttgatcctggtgctggtcgcggcgctcgcgttgggcggtgtcctc
ggctacaactggtactccctgaagccggagccggtgcccgtgggcactccgccgcggccg
gcggcggtgactgtggacccgagcattcgcccggtgtctccggatgcgccgatgccgacc
aaggccgggatcgcggctgcgctgcgggagggtctgcggaaccgtgacctggggaagctg
acgggaatggtctccgatccggtcaccggtgaggtgctgtggtccaaggaccccgacgat
ccgcgcaccccggcgtcgaatgcgaagatcctgaccgccgcggcggtgctggagcagctc
gatcacggctcccggctgaccaccgaagtggtgcagggcgacgacggtcaggtgatcctg
gtcggggcgctcgaccccacgctttcggtgcaggacccgggcagcgacacgttctacacc
gatgcgccccgcatctccgacctcgccgagcagatccgcaaatcgggagtcgaggtgacg
tcggtggccgtggctcccagttccgtcgagggacccgcgatggagcgcacctggtccgag
gaggacatcgagggcggcgacatcgcgccgatcacgtcgctcatggtcgacggcgcccgg
cagcggccgctggaggagtactcgccgcggtccgcggagccggacgtcgacgccggccgg
gcgctcgccgagcagctgggcgtgagtacgcgggtgacgcaggcgcagccgaggccgtcg
gcacgcacactcgcttcggtcgaatcggcgccgctgtccacgcgggtcggcgacatgatg
cgcttgagcgacaacatcctggcggagacgctggcgatcgagctgtccgaggcgatgggc
ggtccggcgagcatcgccggcggaacggaagcgatcgtgaaggtcctgcgcgacaagggg
ttcgacgtcagcggtgtggtccttcgggatgcgtcgggactctcgaccgcgaacaaggtg
cctgcgcggttgctcgaccggctggtctccgcggcggccggcgacgctcatccgaagctg
cggccgctgctggacacgttcccggtcgcggccggcacgggcaccctcgccacccgcttc
ccacccgggaacccgggtgcgggctgggtacgcgccaagaccgggacgctcaccggggtg
agctcgttgaccgggatcgtccagacggtcgacggccgggtgctggcgttcgcgctgatg
tccggcggcacgtcgcccgccgacgcccgtccggctctggacgatctggtcggtgcgctg
cgtgagtgcggttgccgcgggtga
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