Gekko japonicus (Schlegel's Japanese gecko): 107109747
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Entry
107109747 CDS
T04299
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03030
DNA replication
gja03410
Base excision repair
gja03420
Nucleotide excision repair
gja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107109747 (LIG1)
03410 Base excision repair
107109747 (LIG1)
03420 Nucleotide excision repair
107109747 (LIG1)
03430 Mismatch repair
107109747 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gja03032
]
107109747 (LIG1)
03400 DNA repair and recombination proteins [BR:
gja03400
]
107109747 (LIG1)
Enzymes [BR:
gja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107109747 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
107109747 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
107109747 (LIG1)
DNA replication proteins [BR:
gja03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
107109747 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
107109747 (LIG1)
DNA repair and recombination proteins [BR:
gja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
107109747 (LIG1)
NER (nucleotide excision repair)
Other NER factors
107109747 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
107109747 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
107109747
NCBI-ProteinID:
XP_015265915
LinkDB
All DBs
Position
Un
AA seq
926 aa
AA seq
DB search
MQSTIRSFFQPLAQIKPGKETAENKQPEDKLTPKKEPKNSDQLVNGTTLHEDSSEKCVAE
QATQNLNGGGEKDSGKPGGRDTKADDANQESDCAPEQKTPAENISPSTSPVASNSPSPSS
IPRRRTARKQLPKRKVEEDDGSQDITQKEMCAKKQKTDSAGEGSKEEPYEKPMEAEDMKE
EDAKIVEVKTEKEEEAEIAEAEEEKMLIPSKPSSKPISSFFAPRKASVKAEKKQTPAMGE
NMPAQRSHSEVSSHESGSAAASSLSPSPTIDPADYNPTKNNYHPLHDACWGPGQRVPYLA
VARTFERIEEESARLKIIETLSNLFRSVIALSPEDLLPCVYLCLNQLGPAYEGLELGIGK
TILMKALAQATGRQLDQIKAEAAEKGDLGLVAESSRTTQGTMFAPPKLGAAVVFGKLQAI
GRMTGSSSMNKKIDIIKSLFVACRYSEARYVARSLEGKLRIGLAEQSVLSALAQAASLTP
PGQKFPPMILDAAKGKSAEARKAWLEERALIVKQAYCELPNYDTLVPVLLEHGVENVPQH
CKITPGIPLRPMLAHPTKGIGEVLKRFDEAAFTCEYKYDGERAQIHILENGEVHIYSRNQ
ENNTSKYPDIVSRIPKVKKSTVQSCILDAEAVAWDPGSKQIQPFQVLTTRKRKDVDATEI
RVQVCVYAFDMLYLNGQSLVREPLAQRRTLLRDSFTEVEGQFLFATSMDTSNTDEIADFL
ECSIKDSCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGNGKR
AGFYGGYLLACYDEESEEYQSICKIGTGFKDEVLEKLHASLKDHVIPQPRPYYRWGGTAE
PDHWLEAQKVWEVKCADLSISPVYKAATGLVDEEKGISLRFPRFLRIREDKKPEEATTSI
QVAELYRKQQQIQNQQSVEKGDGDFY
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcacaatcagatcattcttccaacctctagcccaaataaagcctggaaaagag
acggcagagaataagcaaccagaagataagctgacccctaaaaaggaaccaaaaaattct
gaccagttggtgaatggtacgaccctccatgaagattcctcagagaaatgtgtagctgaa
caagccactcagaaccttaatggtggaggtgaaaaagattctgggaaaccaggaggaaga
gatacaaaggcagatgatgcaaaccaggaatcggactgtgctcctgagcaaaagacacct
gcagagaacatctccccaagcaccagcccagttgcctctaattcaccttcaccttccagc
attccccggcgcagaactgcccgcaagcagctccctaaacgtaaagtggaggaagatgat
ggcagtcaagacatcactcagaaggagatgtgtgccaaaaaacagaaaacagacagtgct
ggggaaggctcaaaagaggaaccatatgaaaagccaatggaagcagaagacatgaaagag
gaggatgctaagattgtggaggttaaaactgaaaaagaagaggaagcagaaatagcagaa
gcagaggaagagaagatgctaataccctccaagccatccagcaaacccatctctagtttt
tttgcccctagaaaagcttctgtgaaagcagagaaaaagcagacacctgcgatgggagaa
aacatgcctgcacaaaggagccacagtgaagtcagtagccatgagtctggcagtgcagct
gcaagttctctcagcccatctcccacaattgaccctgcagattataaccccacaaagaac
aactatcatcctctccatgatgcttgttggggtcctggccagagggtaccatatctggct
gtggcccgtacctttgagcggattgaagaagagtctgcccggctgaaaatcatagagact
ctgagcaatctgtttcgctctgtgattgctctgtctcctgaagacttgctgccctgtgtg
tacctctgcctcaatcagctaggcccagcgtatgagggcctagagttgggcattggcaaa
accatcctcatgaaagccttggctcaggccacaggtcggcagctggaccagatcaaggca
gaggcagcggagaagggggacctgggtttggttgcagagagtagccgcaccactcagggc
accatgtttgccccgcccaagcttggtgctgctgttgtctttggcaagttacaagcaatt
gggcgtatgacaggaagttcttccatgaacaagaagattgacattatcaagtccttgttt
gttgcttgtcgctactcagaggctcgctatgttgctcgatcactggaagggaagctgcgg
attgggctagcagaacagtctgtcctgtcagccctggcccaggcagcatcacttacacct
ccaggacagaaattccccccaatgattctggatgctgctaaggggaaatctgcagaggcg
cgcaaagcctggctagaggagagagccttgattgttaagcaagcctactgtgaactgcca
aattacgacacccttgtgcctgtcctcctagagcatggtgtggagaacgtgcctcagcac
tgcaagatcacaccagggatcccattgaggccgatgttggcccacccaaccaaaggcatt
ggggaagtcttaaagcgctttgatgaagcagctttcacctgtgaatacaagtatgatggg
gaacgggcacagatccacatcctggagaatggggaagtgcacatttacagcaggaaccaa
gagaacaacacatccaagtatcctgacattgtcagtcgtatccccaaggtgaaaaaaagc
actgtgcagtcatgcatcttggatgcagaggctgtggcctgggacccaggttcaaaacag
atccagcccttccaggtactgaccacccgcaagcgcaaggatgtggatgctacagagatc
cgagtgcaagtgtgtgtgtatgccttcgacatgctctacctcaatgggcagtcattggtc
cgggagcccctagcccagcgccgaactttgttgcgtgattccttcactgaggttgaaggc
cagttcctctttgccacctccatggatactagtaacaccgacgaaatagcagatttcctg
gagtgctccatcaaagactcatgtgaggggctgatggtgaaaacattggaagtggatgcc
acgtatgaaattgcaaagagatcccacaactggctgaagcttaaaaaagattacctggac
ggtgttggggacacactggacctggtggtgattggtgcctacctgggaaatggcaaacgt
gcaggcttctatggaggctacctcttggcttgctacgatgaggagagtgaggagtaccag
agcatctgtaagatcggcactggattcaaagatgaggtcctggagaaacttcatgcctcc
ctcaaggaccatgtgattccgcagccacgcccatactaccgctggggtggaacagctgaa
cctgaccattggctagaggcccaaaaagtctgggaggtgaaatgcgctgacttatccatt
tctcccgtttacaaggcagccactggtttggtggatgaggaaaagggaatttctctacgc
ttccctaggttcctccgtatccgggaggataagaaaccggaagaggccactaccagcatc
caggtggctgaactataccggaagcagcagcaaatccagaaccagcagtcagtggaaaaa
ggagatggcgatttttactag
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integrated database retrieval system
