KEGG   Gekko japonicus: 107109747Help
Entry
107109747         CDS       T04299                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
gja  Gekko japonicus
Pathway
gja03030  DNA replication
gja03410  Base excision repair
gja03420  Nucleotide excision repair
gja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gja00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    107109747 (LIG1)
   03410 Base excision repair
    107109747 (LIG1)
   03420 Nucleotide excision repair
    107109747 (LIG1)
   03430 Mismatch repair
    107109747 (LIG1)
Enzymes [BR:gja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107109747 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     107109747 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107109747 (LIG1)
DNA replication proteins [BR:gja03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107109747 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107109747 (LIG1)
DNA repair and recombination proteins [BR:gja03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107109747 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     107109747 (LIG1)
   MMR (mismatch exicision repair)
    Other MMR factors
     107109747 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 107109747
NCBI-ProteinID: XP_015265915
LinkDB All DBs
Position
Un
AA seq 926 aa AA seqDB search
MQSTIRSFFQPLAQIKPGKETAENKQPEDKLTPKKEPKNSDQLVNGTTLHEDSSEKCVAE
QATQNLNGGGEKDSGKPGGRDTKADDANQESDCAPEQKTPAENISPSTSPVASNSPSPSS
IPRRRTARKQLPKRKVEEDDGSQDITQKEMCAKKQKTDSAGEGSKEEPYEKPMEAEDMKE
EDAKIVEVKTEKEEEAEIAEAEEEKMLIPSKPSSKPISSFFAPRKASVKAEKKQTPAMGE
NMPAQRSHSEVSSHESGSAAASSLSPSPTIDPADYNPTKNNYHPLHDACWGPGQRVPYLA
VARTFERIEEESARLKIIETLSNLFRSVIALSPEDLLPCVYLCLNQLGPAYEGLELGIGK
TILMKALAQATGRQLDQIKAEAAEKGDLGLVAESSRTTQGTMFAPPKLGAAVVFGKLQAI
GRMTGSSSMNKKIDIIKSLFVACRYSEARYVARSLEGKLRIGLAEQSVLSALAQAASLTP
PGQKFPPMILDAAKGKSAEARKAWLEERALIVKQAYCELPNYDTLVPVLLEHGVENVPQH
CKITPGIPLRPMLAHPTKGIGEVLKRFDEAAFTCEYKYDGERAQIHILENGEVHIYSRNQ
ENNTSKYPDIVSRIPKVKKSTVQSCILDAEAVAWDPGSKQIQPFQVLTTRKRKDVDATEI
RVQVCVYAFDMLYLNGQSLVREPLAQRRTLLRDSFTEVEGQFLFATSMDTSNTDEIADFL
ECSIKDSCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGNGKR
AGFYGGYLLACYDEESEEYQSICKIGTGFKDEVLEKLHASLKDHVIPQPRPYYRWGGTAE
PDHWLEAQKVWEVKCADLSISPVYKAATGLVDEEKGISLRFPRFLRIREDKKPEEATTSI
QVAELYRKQQQIQNQQSVEKGDGDFY
NT seq 2781 nt NT seq  +upstreamnt  +downstreamnt
atgcagagcacaatcagatcattcttccaacctctagcccaaataaagcctggaaaagag
acggcagagaataagcaaccagaagataagctgacccctaaaaaggaaccaaaaaattct
gaccagttggtgaatggtacgaccctccatgaagattcctcagagaaatgtgtagctgaa
caagccactcagaaccttaatggtggaggtgaaaaagattctgggaaaccaggaggaaga
gatacaaaggcagatgatgcaaaccaggaatcggactgtgctcctgagcaaaagacacct
gcagagaacatctccccaagcaccagcccagttgcctctaattcaccttcaccttccagc
attccccggcgcagaactgcccgcaagcagctccctaaacgtaaagtggaggaagatgat
ggcagtcaagacatcactcagaaggagatgtgtgccaaaaaacagaaaacagacagtgct
ggggaaggctcaaaagaggaaccatatgaaaagccaatggaagcagaagacatgaaagag
gaggatgctaagattgtggaggttaaaactgaaaaagaagaggaagcagaaatagcagaa
gcagaggaagagaagatgctaataccctccaagccatccagcaaacccatctctagtttt
tttgcccctagaaaagcttctgtgaaagcagagaaaaagcagacacctgcgatgggagaa
aacatgcctgcacaaaggagccacagtgaagtcagtagccatgagtctggcagtgcagct
gcaagttctctcagcccatctcccacaattgaccctgcagattataaccccacaaagaac
aactatcatcctctccatgatgcttgttggggtcctggccagagggtaccatatctggct
gtggcccgtacctttgagcggattgaagaagagtctgcccggctgaaaatcatagagact
ctgagcaatctgtttcgctctgtgattgctctgtctcctgaagacttgctgccctgtgtg
tacctctgcctcaatcagctaggcccagcgtatgagggcctagagttgggcattggcaaa
accatcctcatgaaagccttggctcaggccacaggtcggcagctggaccagatcaaggca
gaggcagcggagaagggggacctgggtttggttgcagagagtagccgcaccactcagggc
accatgtttgccccgcccaagcttggtgctgctgttgtctttggcaagttacaagcaatt
gggcgtatgacaggaagttcttccatgaacaagaagattgacattatcaagtccttgttt
gttgcttgtcgctactcagaggctcgctatgttgctcgatcactggaagggaagctgcgg
attgggctagcagaacagtctgtcctgtcagccctggcccaggcagcatcacttacacct
ccaggacagaaattccccccaatgattctggatgctgctaaggggaaatctgcagaggcg
cgcaaagcctggctagaggagagagccttgattgttaagcaagcctactgtgaactgcca
aattacgacacccttgtgcctgtcctcctagagcatggtgtggagaacgtgcctcagcac
tgcaagatcacaccagggatcccattgaggccgatgttggcccacccaaccaaaggcatt
ggggaagtcttaaagcgctttgatgaagcagctttcacctgtgaatacaagtatgatggg
gaacgggcacagatccacatcctggagaatggggaagtgcacatttacagcaggaaccaa
gagaacaacacatccaagtatcctgacattgtcagtcgtatccccaaggtgaaaaaaagc
actgtgcagtcatgcatcttggatgcagaggctgtggcctgggacccaggttcaaaacag
atccagcccttccaggtactgaccacccgcaagcgcaaggatgtggatgctacagagatc
cgagtgcaagtgtgtgtgtatgccttcgacatgctctacctcaatgggcagtcattggtc
cgggagcccctagcccagcgccgaactttgttgcgtgattccttcactgaggttgaaggc
cagttcctctttgccacctccatggatactagtaacaccgacgaaatagcagatttcctg
gagtgctccatcaaagactcatgtgaggggctgatggtgaaaacattggaagtggatgcc
acgtatgaaattgcaaagagatcccacaactggctgaagcttaaaaaagattacctggac
ggtgttggggacacactggacctggtggtgattggtgcctacctgggaaatggcaaacgt
gcaggcttctatggaggctacctcttggcttgctacgatgaggagagtgaggagtaccag
agcatctgtaagatcggcactggattcaaagatgaggtcctggagaaacttcatgcctcc
ctcaaggaccatgtgattccgcagccacgcccatactaccgctggggtggaacagctgaa
cctgaccattggctagaggcccaaaaagtctgggaggtgaaatgcgctgacttatccatt
tctcccgtttacaaggcagccactggtttggtggatgaggaaaagggaatttctctacgc
ttccctaggttcctccgtatccgggaggataagaaaccggaagaggccactaccagcatc
caggtggctgaactataccggaagcagcagcaaatccagaaccagcagtcagtggaaaaa
ggagatggcgatttttactag

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