Gekko japonicus (Schlegel's Japanese gecko): 107112626
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Entry
107112626 CDS
T04299
Symbol
COL18A1
Name
(RefSeq) collagen type XVIII alpha 1 chain
KO
K06823
collagen type XVIII alpha
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gja04147
]
107112626 (COL18A1)
00535 Proteoglycans [BR:
gja00535
]
107112626 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
gja00536
]
107112626 (COL18A1)
Exosome [BR:
gja04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107112626 (COL18A1)
Proteoglycans [BR:
gja00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107112626 (COL18A1)
Glycosaminoglycan binding proteins [BR:
gja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107112626 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
107112626
NCBI-ProteinID:
XP_015269297
LinkDB
All DBs
Position
Un
AA seq
1572 aa
AA seq
DB search
MARAVQNIGLLLLLTCSLSDAQGWRSWLWGSSEKTTLPPTKAVDTEDQTTHRVTTSEATT
LDIPPESTTQQTGHVWNIFTLKRPDLPASTTVPTTATASPSELGGREGTIAGVGAEILSV
AEGIRSLVQQWDKKTTEGTQRTEASVTAGFLEASSLHAVELTAVQNVTANVTGDVQILLE
TEQPHVALSATTKPEFPLNKTQVPLKTPETPRPENFSTEVGLLELIGDPPPDQITKIYGP
DHSPGYVFGLDANTGQVARYHLPSPFYRDFSLLFHVQPTSDKAGVLFAITDASQSIIYVG
VKLSEVKDGKQQILFYYTEPGSQNSYAAATFTVPSLVNQWTRFAISVEEEEVVLYMDCEA
FERVRFERSPDEMELEEGSGLFVAQAGGADPEKYQGVIAELKVKGDPRAAEVQCEEEEDD
SDMASGDGGSGAEEKPQPSEKEKGGAVLPSLPEPPPVTSPPTAKEPAQPEERPSLHTERT
KPGGTPPSASGVGAKGEKGDQGEKGERGPKGDSGVGEVLPAGGTKGEKGEKGELGVKGNA
GFGYPGAKGQKGEPGAQGSPGPVGPPGPPGTMLQSPDGSLIEQVAGPPGPAGPPGTPGKD
GLPGKDGEPGDPGEDGKPGDIGPQGFPGTPGEPGQKGEKGDSGVGAQGPPGPPGPPGLPG
LSSKLDKLTFIDMEGSGFGGDLESLRGPRGPAGPPGPPGVPGLPGQPGRFGVNSTGLPGP
PGLPGVPGRDGSPGLPGPPGSPGRDGIPAQPGANGAAGDPGELGLPGAPGPKGSRGDAGL
PGAPGETGLAGLPGPMGPRGPPGPPGPPGPGFAPGIDDMEGSGLPFVSAVPGARGPEGPQ
GPPGLPGLKGDTGSSGVPGEKGEKGEPGLAGLDGRPGLEGFPGPQGVKGDKGDSGDKGER
GRAGVGLPGPPGPPGPPGQDTYTASRDDRSLSSVLGPEGKQGHAGFPGPVGPKGDTGSPG
LQGTPGLKGEKGEPGVIIGPDGTVIAAQAKGEKGEPGARGPVGPAGPPGQHGQKGEIGFP
GRPGRPGMNGLKGEKGDPADSTGGRGLMGLPGLPGPPGPPGPPGSIVPVYDNNAFSEMGP
PGPPGLPGYHGAPGEKGEKGEMGPPGPSGQFPYDLSIFGSTIRGEKGDRGDAGARGEKGE
PGGGGFFGSSVAGPPGPPGYPGLPGPKGDSVRGPPGPPGPQGPPGAGFEGRPGPPGPPGP
PGPLSFPGPHRQSISIPGPPGPPGPPGVGDASSGLRILPTYQSMMSRAHETPEGQLLFVR
DREELYIRVRSGFRRVLLEERVSISGPGLDNEVYDRPPSIHYSHGEGTASSGSQRPFPQH
LPVHPHREHGVYSTAKPWRGDESVANQQRLPEQPAIHHPPRQGGQQQEEQANAFFHNSRP
SGTLPSAVHTHHDFQPALHLIALNTPLSGSMRGIRGADFQCFQQAREAGLAGTFRAFLSS
RLQDLYSIVRRADRSMVPIVNLRDEVLFTNWEYLFSGSEAPFRTGVHILSFDGRDVLRDS
AWPQKSVWHGSDAKGRRLTESYCETWRTDDAVVTGQAASLASGKLLEQKSSSCKSAFVVL
CIENSFMTSSQK
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagctgtgcagaatatcggactcctgctgttgctgacctgtagcttatcagat
gcccagggctggaggagttggctttgggggagttcagagaaaacaaccctccctcccaca
aaggctgtcgataccgaggaccagacgacacatcgagtaaccacatccgaagcgaccacc
ttggacatccccccagaaagtaccacacagcaaacgggacacgtatggaatatatttacc
ctcaagaggccagacctgcctgcaagcacaactgtccccaccacagctactgcgtcacct
tctgagctgggaggccgagaggggactatcgcaggggtcggggctgagatactcagtgtg
gctgaagggattcggagtctggttcagcaatgggataaaaagacaaccgaagggacacag
aggactgaggcatcggtgacagctgggtttttggaagcttcctctcttcatgctgtggag
ctcactgctgtccagaatgtaactgccaacgtgacgggtgatgtgcagatcttactggaa
actgagcagcctcacgttgctctctcagcgactacaaagcccgaatttccgttgaacaag
actcaagttccattaaagacgcctgagacaccacgcccagaaaatttcagcacagaagtt
ggtctcttagagctgattggggatcccccgccagaccagataaccaaaatatacggtcct
gaccacagtcctggctacgtgtttggactggatgccaacactggccaagtggcccgctac
cacctccccagccctttttacagagacttctcactcctgttccacgttcagcccacgtcg
gacaaggctggtgtgctttttgccatcacagatgcttcccagtcgatcatctatgtgggt
gtgaagctttcagaggtcaaggatgggaagcaacagatactcttctactacacagagcct
ggctctcagaactcctatgcggctgccacattcaccgtgccttcccttgtcaaccagtgg
actcgctttgccatcagcgtcgaggaggaagaggtggttctctacatggactgcgaggca
tttgagcgagtccggtttgagcgctcgcccgatgagatggagctggaagaaggctctggg
ctctttgttgcccaagctggaggggctgatccagaaaaatatcagggtgtcattgcagaa
ctgaaagtgaaaggagatcctcgggcagctgaagtccagtgcgaggaagaggaggatgat
tctgatatggcgtctggagatggtggaagtggggctgaagaaaagccacagccatcagaa
aaggaaaaggggggtgccgtgctgccaagcctcccagaacccccgcctgtcacgtcccct
cccaccgccaaggagcctgcacagccagaagagaggcccagtctgcacacggaacggacc
aaaccaggagggaccccgccgtctgcttcaggcgttggagccaaaggtgaaaaaggggat
cagggtgaaaaaggtgagcgtggccctaaaggagattctggagtcggtgaagttctacca
gcaggtggcactaaaggtgaaaagggagagaaaggagagttgggtgttaagggaaatgca
ggctttgggtatccgggcgcgaaaggacagaaaggcgagcctggtgcacaaggatctccc
ggccccgtgggtccccctggccctcctgggaccatgctgcaaagccctgacggctctctt
atagagcaagtggctgggcctccgggacctgcaggcccaccagggacacctgggaaagat
ggtctacctgggaaggatggagagcctggggatcctggtgaagatggtaaaccaggtgac
attggcccccagggattccctgggaccccaggggagcctgggcagaaaggagaaaagggt
gattcaggcgttggcgcacaaggtccccctggtccaccaggaccacctgggctaccagga
ctcagttctaaactggacaagttgacatttattgatatggaaggctctggctttggaggt
gacttggaaagtttacggggccccagaggacctgctgggccccccgggcctcctggagtg
ccaggcttgccaggacaacctgggagatttggagtgaacagcacgggccttccagggcca
cccgggctcccgggagtgccaggcagagatggcagcccaggacttcctggacctcctggt
tctcctggaagagatggcatccctgcccagcctggggccaatggagcagccggagaccca
ggagaactaggccttccaggagcacccggacccaagggcagcagaggagatgcagggttg
cccggagcaccaggggaaactggcctggcaggacttccagggcccatgggtccccgagga
ccgcctggacctcctggtccacctgggccaggcttcgcacctggaattgacgatatggag
ggctcaggactgccatttgtttctgctgtccctggagcacgtggaccagaagggccgcag
gggccaccgggacttccagggctcaagggggacactggcagttctggtgtgccaggagag
aaaggagaaaagggagaaccaggattggcaggactggatggtcggcctggactagagggt
ttcccggggccacagggggtgaaaggtgacaaaggagactcaggggataaaggtgaacga
ggtcgagctggagtgggattgcccggcccccctgggccccccggccctcccggacaagat
acctacactgcctccagggacgatagaagcttgtctagtgtcctaggcccagaaggcaaa
caagggcatgctggtttcccaggaccagttggaccaaagggcgacacaggatcaccaggt
cttcaagggactccaggactgaagggtgaaaaaggagagccaggcgttataattggccct
gatggaactgtcatagcagctcaggcaaagggagaaaagggcgagccaggggcaagagga
cctgtgggaccagcagggccacctgggcagcatggacagaaaggagaaattggctttcct
ggaagacctggccggcctggaatgaatgggttgaaaggagaaaaaggtgacccagcagac
tcaactggagggcggggcttaatgggtcttccaggtctccctggaccacccgggcctcca
ggacctccaggcagtatagttcctgtttatgacaataatgcatttagtgagatgggccct
cctggacctccaggcctgcctggctaccatggtgctcctggtgagaagggagaaaaaggc
gagatggggcctccgggaccatcaggccagttcccctatgatctcagcatatttggctcc
acaattaggggagaaaagggggacagaggggacgctggggcaagaggtgaaaagggtgag
ccaggaggcggcgggttctttggctcaagcgttgcaggccctccaggtcctcccggatat
cctggccttccggggccaaaaggggacagtgttaggggaccacctggtccccctgggcct
caaggacctcccggtgcaggatttgagggacgaccaggtcctccgggtcctcccggacct
cctggtcccctttcttttccaggtccccatagacaatccatcagtatcccggggccaccg
gggccgccaggacctccaggcgttggtgatgcatcttctgggctgcgaatcttgccaacg
tatcagagcatgatgagcagagctcatgaaacacccgaagggcagctcctcttcgtccgg
gacagagaagagctctacatccgtgtccgcagtggtttcaggagagtccttcttgaggaa
agagtctctatctctggtcctggtctggacaatgaggtatacgataggcctcccagtatc
cactactcacacggtgagggcacagcatcatctggatcccagcgcccatttccacagcat
ttgcctgtgcatcctcaccgagagcacggggtctactccactgccaagccctggagagga
gatgagagtgtggccaaccaacagcgccttcccgagcaacctgccatccaccacccccct
cgtcagggagggcagcagcaggaagagcaagcgaacgccttcttccataacagccgcccg
tccggaactcttccttctgctgttcacacacaccatgacttccagccggctctccacctt
atagccctgaacactcccctgagtggcagtatgcgtggcatccgaggggctgacttccag
tgtttccagcaagcgagggaggctggactagcgggcaccttccgagcattcctctcgtcc
cgactgcaagacctctacagtatagtgcggagagcagacaggagtatggtgcctatagtc
aatctcagggatgaagtgctgtttactaactgggagtacctcttctcaggctctgaggct
ccctttagaactggggttcatatcctctcctttgatggaagggacgtcttgagagattct
gcatggcctcagaaatccgtgtggcacggctccgacgccaaggggcggcggttaacagag
agctactgtgaaacgtggcggacagatgatgcggtggtgaccgggcaggccgcctcactg
gcttcaggcaagctgctggaacagaagagcagcagctgcaaaagtgccttcgtcgtcctg
tgcatcgaaaacagcttcatgacgtcttctcagaaatga
DBGET
integrated database retrieval system
