Gekko japonicus (Schlegel's Japanese gecko): 107112897
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Entry
107112897 CDS
T04299
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
107112897 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gja03400
]
107112897 (LIG4)
Enzymes [BR:
gja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107112897 (LIG4)
DNA repair and recombination proteins [BR:
gja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
107112897 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
107112897
NCBI-ProteinID:
XP_015269591
LinkDB
All DBs
Position
Un
AA seq
912 aa
AA seq
DB search
MSSIPASRAPSQVTVASQVPFADLCSTLEQIQKCKSRPEKTKYFKDFLDSWRKFHDALHK
GEKNVMDSFYPAMRLTLPQLERERMAYGIKETMLAKLYIELLNLPKGGKDALKLLNYRTP
AGSRGDAGDFATIAYFVLKPRCIKQGQLTIQEVNVLLDSVSTNNASKRKDLVKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGISQQTLFSIFHPDATELFGVTTDLEKVCRQLHDPSVSL
SDVSISLFSAFKPMLAAIADIQQIEKQMNHQSFYIETKLDGERIQMHKDGDVYKYFSRNG
YDYTLQFGASPLEGSLTPFVHNVFREDVQNCILDGEMMAYNPMTQTFTQKGSKFDIKRMV
EDSELQTCFCVFDVLMANGQKLGHEMLSKRYEILNKLFTPITGRIQVVLKHQASTRKEVI
DALNDAIDNREEGIVVKDPASVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAEIPLPGEKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYRKKDPP
CNILCGTEKPEVYIEPCNSVIVQVKAAEIVSSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDLLEQLRGKASGKLATKHLDVGHDEPQGKKRKAVPKVKKIIGVMDHFKAPDLSNVSRLS
SIFEDVEFCVMTGTESCSKNELESKIAEFGGSVVQNPGPDTYCVVVGTENIRVRNIVSSN
KYDVVRAEWLLQCFERQAFVPWQPTFMIHMSSETKEHFACKYDRYGDSYTADTDMAQLKG
LFSRMSNLREEISWDAIADLEERYSWGSSQLSMFRQRTVYLDLSDKVGDSRDKVNRTRVV
TGALMLRFHGARVSLRLEEGVSHVIIGEDRGRVKEIKAVRRTFTRKFKILSEQWVKDSIK
AGKLQNEDAYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatccctgcttcccgtgctccttcacaggtgactgtggcatcacaagtccct
tttgcagacctctgctcgactctagaacaaatacagaaatgtaaatcccggccagagaag
acaaagtatttcaaagattttttagattcctggaggaaatttcacgatgcccttcacaaa
ggtgaaaagaacgtgatggattctttttatcctgctatgagacttacccttccccagctg
gaaagggagaggatggcttacggaattaaagaaacgatgctggctaagctctacatcgaa
ctgctaaacttacccaagggggggaaagacgctttaaaacttttaaattatcgaacccct
gctggctcgcggggagatgctggggattttgcgacaatagcctattttgtgctgaagcca
aggtgcatcaagcaaggtcagttgaccatacaggaggtgaacgttcttctagattctgtt
tctaccaataatgcttctaaaaggaaagatttggtcaagaagtctcttctgcagttgata
actcagagctcggcactcgaacagaagtggctgattagaatgattataaaggatttgaaa
ctgggcatcagccaacagaccttattttccatcttccatcccgacgccacagagctgttc
ggcgtcacaaccgatctggagaaggtttgcaggcagctgcacgatccttccgtgtctctc
agcgatgtttccatttctctcttttccgccttcaagccgatgcttgctgcaatcgccgac
atacaacaaattgaaaagcagatgaaccatcagagtttctacatagaaaccaagttggac
ggcgagcggatacagatgcacaaagatggggacgtgtacaagtatttctcgcggaatggc
tatgattatactctgcagtttggggcatcccccctcgaaggttcgttgacgccgttcgtt
cataacgtttttcgggaggatgttcagaactgcattctggatggcgaaatgatggcctac
aaccccatgacacaaaccttcacgcagaagggaagtaagtttgacatcaagaggatggtg
gaggattctgaactgcagacgtgcttctgcgtgtttgatgtcctaatggcgaatggccag
aagttgggtcacgagatgttgagcaaaaggtacgagatactcaataagctctttacccca
ataacaggtcgaatacaggttgttcttaaacatcaagccagcacacggaaagaagttatc
gatgctctaaatgatgctatagataacagggaagaaggaattgtggtgaaagaccccgca
tccgtttacaagccagataaacgtggagaaggatggctgaagataaaaccagagtacgtc
gatgggctgatggatgagctagaccttctgattgtggggggctactggggaaaaggcctt
cgtggtggcatgatgtcccacttcctgtgcgcagttgctgagatacctctacctggtgaa
aaaccatctgtgttccattctatttgtcgtgtcggttctggctacactatgaaagagctg
tatgatcttggcctgaaattagccaaacactggaaaccgtatcgtaaaaaagatcctcct
tgcaacatcttgtgtgggacagagaagcccgaggtctatattgagccttgcaattcagtc
attgttcaggtcaaagcagctgagattgtcagtagcgatatgtacaaaactgattgtacc
ttgcgtttccctcgtattgagaagatcagagaggataaagagtggtacgaatgtatgact
cttgaccttttagaacagctcagaggcaaagcttcagggaagctggcgacgaagcacctc
gacgttggtcacgatgagccgcaagggaaaaagcgtaaagctgtgcccaaggtcaaaaaa
ataattggagtaatggatcattttaaagcccccgatctttctaacgttagcagactttcc
agcatatttgaagatgttgagttttgcgtcatgactgggacagaaagctgttcaaaaaac
gagctggaaagcaaaatagcagagtttggcggtagcgtagtacaaaacccgggtccggac
acgtattgcgtcgtcgtagggactgagaacatccgagtgagaaatattgtttcttccaac
aagtatgatgttgtgagagcagagtggcttttacagtgctttgaaaggcaggcgtttgtg
ccgtggcaacctactttcatgattcatatgtcctctgaaacgaaagaacactttgcctgc
aagtatgaccgctatggtgacagttacactgctgatactgacatggcccagttaaagggg
ttgttctcacggatgagtaatttgagggaggagatctcttgggacgcgattgctgaccta
gaagaacggtattcctggggcagctctcagctcagcatgttcaggcagcgcaccgtttac
ctggacctctctgacaaagtcggcgattcgagagacaaagttaatcggacgagagtggta
accggcgcgttgatgcttcgctttcacggagcgagggtcagcttgcggctggaggaaggg
gtgtcccacgtaattatcggggaagatcgtggtcgggtaaaggagataaaggcggtcaga
cgaacatttacaaggaagtttaaaattctgtctgaacagtgggtaaaggattccataaag
gctgggaaattacagaatgaggatgcttacttaatttaa
DBGET
integrated database retrieval system
