Gekko japonicus (Schlegel's Japanese gecko): 107122492
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Entry
107122492 CDS
T04299
Symbol
HMGB1, HMGB1a
Name
(RefSeq) high mobility group box 1
KO
K10802
high mobility group protein B1
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03410
Base excision repair
gja04140
Autophagy - animal
gja04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107122492 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107122492 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
107122492 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gja03036
]
107122492 (HMGB1)
03400 DNA repair and recombination proteins [BR:
gja03400
]
107122492 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gja04147
]
107122492 (HMGB1)
Chromosome and associated proteins [BR:
gja03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
107122492 (HMGB1)
DNA repair and recombination proteins [BR:
gja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
107122492 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
107122492 (HMGB1)
Exosome [BR:
gja04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
107122492 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
NOA36
HMG_box_5
DUF4667
Motif
Other DBs
NCBI-GeneID:
107122492
NCBI-ProteinID:
NP_001310420
UniProt:
E2GAF6
LinkDB
All DBs
Position
Un
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EEMAKGDKVRYEREMKNYIPPKGESKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL
SIGDVAKKLGEMWNNTAGDDKQPFEKKAAKLKEKYEKDIAAYRAKGKPDVAKKIAPKPEK
SKKKKEEDDDDDEDDDEEEEDEEEEEEEEEEEDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggggatcctaaaaagccgagaggtaaaatgtcctcatatgccttctttgtg
caaacttgccgggaagagcacaagaagaaacatccagatgcttctgtgaatttttcagag
ttctcaaagaagtgttcagaaaggtggaagactatgtctgctaaagagaagggaaagttt
gaagagatggcaaaaggtgacaaggttcgttatgaaagagaaatgaaaaattatatacca
cctaaaggagagtcaaaaaagaagttcaaggacccaaatgcaccaaagaggcctccttca
gcatttttcttgttctgctctgagttccgtccaaaaatcaaaggagaacatcctggtctt
tctattggggatgttgcaaagaaacttggggagatgtggaataatactgctggagatgat
aagcaaccctttgaaaagaaggctgctaagctgaaggagaagtatgaaaaggatattgct
gcctaccgggctaaaggaaagcctgatgtagcaaaaaagatagctcctaagcctgagaag
agcaagaaaaagaaggaagaggatgatgatgatgatgaagatgatgatgaggaggaagag
gatgaagaagaggaggaggaggaggaagaagaagaggatgatgaataa
DBGET
integrated database retrieval system
