Grimontia kaedaensis: K6Q96_14235
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Entry
K6Q96_14235 CDS
T09175
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
gkd
Grimontia kaedaensis
Brite
KEGG Orthology (KO) [BR:
gkd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gkd03009
]
K6Q96_14235 (srmB)
Enzymes [BR:
gkd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K6Q96_14235 (srmB)
Ribosome biogenesis [BR:
gkd03009
]
Prokaryotic type
rRNA helicases
K6Q96_14235 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_19
Bcr-Abl_Oligo
YdaS_toxin
Motif
Other DBs
NCBI-ProteinID:
USH02012
LinkDB
All DBs
Position
I:3160496..3161737
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AA seq
413 aa
AA seq
DB search
MRTFAELELDPQLLQALDDMSFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPL
LQHLIDFPRQKPGPARALILTPTRELAIQVADQARALAKYTDLKIITITGGISYQEHAEI
LGKTQDIVVATPGRLMEYIEAERFDCRAIESLVLDEADRMLDMGFGPAVDKLSTECRWRK
QSMLFSATLEGKGIEGFKNTLLTDPVEVEAEPPRRERKKITQWYYRCDDMAHKNALLKAI
LTEQAERAIIFVKTRERLAALREFLTKEKVNCAWLQGEMAQAKRTYAIERFTTGEINVLL
ATDVAARGIDVPDIDHVINFDLPRKADVYLHRIGRTARAGKKGNAISLVEAHDQPMMDRI
CRYMKEDVKERYVDGMKPKHKKPEFKKKKKKLSNKEVKGKAKKAAKKSAKKSA
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaacttttgctgaactagaactggatcctcaactgctacaagcgctggatgacatg
agcttcgagcgaccaacagcgatccaggctggcgtgatccctcatggtatggatggccgt
gatattttggcgtctgcgccaacgggaacagggaaaacggcggctttcgtattgccattg
ctgcaacaccttattgacttccctcgtcagaagccgggtcctgcacgcgccctgatcctg
actccaacccgtgaactggccattcaggttgctgatcaagcccgcgcgttggcgaaatac
acagatttaaagatcatcaccatcacaggtggtatctcgtaccaagagcatgctgagatt
ctggggaaaacccaagacatcgtggttgcgactcctggtcgtctgatggaatacatcgaa
gctgaacgctttgactgtcgcgcaattgaaagcctggtactggacgaagccgaccgcatg
ctggacatgggctttggccctgctgttgataaactctctaccgaatgtcgctggcgcaaa
caaagtatgctgttctccgcgacgctggaaggtaaaggcattgaaggtttcaagaacacc
ctgctgaccgatccggtagaagtagaagctgagccaccacgccgtgaacgcaagaagatc
actcagtggtactaccgctgtgacgacatggcgcataaaaatgccctgttaaaagcaatt
ctgacggaacaggctgagcgtgcgatcatctttgtgaaaacccgtgagcgcctggctgca
ctgcgtgaattcctgaccaaagagaaagtgaattgtgcatggctgcaaggtgaaatggct
caggcaaagcgtacttacgcgatcgagcgtttcaccactggtgaaattaatgttctgtta
gcgactgatgttgcagcacgtggtatcgacgtgccagacatcgaccacgtcatcaacttc
gacctgccacgcaaagccgacgtgtacctgcaccgtatcggtcgtaccgcccgcgcgggt
aagaaaggtaacgccatttctctggtagaagcacacgatcaaccaatgatggaccgtatc
tgccgctacatgaaagaagacgtgaaagaacgctatgttgatggcatgaagccaaaacat
aagaagccggaatttaagaagaaaaagaaaaagctttctaacaaagaagtaaaaggaaaa
gctaagaaagcggcgaagaaatcagcgaaaaaatccgcataa
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