Glaciimonas sp. PAMC28666: JQN73_04935
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Entry
JQN73_04935 CDS
T07066
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
glc
Glaciimonas sp. PAMC28666
Pathway
glc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
glc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JQN73_04935 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
glc03021
]
JQN73_04935 (rpoD)
Transcription machinery [BR:
glc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JQN73_04935 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4238
GerE
Motif
Other DBs
NCBI-ProteinID:
QRX83586
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All DBs
Position
1180215..1182767
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AA seq
850 aa
AA seq
DB search
MVNAMKKPAKTQTISTRITKPTATKLAAHSSTVKPIKTTAIKSLSKTAGKSPGQVINGPD
TKKLAPEVAVIAAPKAVSKAAATPTKKSASSTVAKPVSVKSKAPVPNKKPLLKVVKSPKN
IAAEIVVVPKDMSVMIGSGVSQTTDAATLAAIDTSSYILPSVKVPGRRGRKPKEFQPEND
EIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEASEEELEARRQKLKTLIKM
GKERGFLTYSEINDHLPENIIDPEAIEGIIGTFSDMGIAVSEHAPDAETLLLSDNVATVT
SDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMI
QAISACPTTIAEIILAAERISKDEIKIDEIVDGLVDLNATDEAVTAAVATADEETDEEEE
DEEEAEEEEEEANSNSGAAGFSAEQLEQLKRDALAKFETISTQFDKMRKAFEKEGYNSKP
YVKAQEIISYELLGIRFTAKVVEKLCDTLRGQVDEVRKIERQILDVAVNKCDMPRLHFIK
VFPGNETNLDWVDGEVNGNHPYSIVLSRNVPAVKELQQRLIDLQARVVLPLPDLRGINKK
MGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLA
IKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRGVV
KDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
DKLKSFLEGN
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggtgaacgcaatgaagaaacccgcgaaaacccagacaatttcaaccaggataacgaag
ccgactgcgacaaaattggccgcgcactcttcaactgtaaaacccattaaaacgaccgct
atcaagtcgcttagtaaaacggcaggaaaatcgccgggtcaggtaattaatggccctgac
accaaaaaactagcgcctgaagtagccgtcatcgctgctcctaaggcagtttccaaggcg
gctgcaacgcccacgaaaaaaagtgcatcaagtactgttgccaagccagtatctgtgaaa
tcgaaagcccctgtgccaaacaagaaacccttactcaaagtcgtcaagtcgcctaaaaac
atcgctgctgaaatagtagttgtcccgaaggacatgagcgtgatgatcggatcaggcgtt
agtcagactaccgatgccgcaactctggcagcaatcgacacgtccagctacattttacct
tcggttaaagtgccgggtcgccgtggccgcaagccgaaagaatttcagcctgagaacgac
gaaatcgctgcgttaaacgcggttgagcgtgccgaacttaaagctgtcgataaagctaag
gccaaggatcggaaagccaaggaaaaagcgctgttgaaagacgccttctcctcagacacc
gaagcctccgaagaagaactcgaagcgcgtcgtcaaaaactgaagacattgattaaaatg
ggcaaggaacgtggtttcctgacctattcggaaatcaacgatcatctgcctgaaaacatc
atcgatccggaagcgattgaaggcatcatcggcacattcagcgatatgggtattgctgtt
tcagagcatgcaccagacgccgaaacactgctcttgtccgacaacgtggcaaccgttacc
agcgacgacgaagcagaagcagccgccgaagccgcactctccaccgttgactcagacttc
ggacgcaccaccgatcctgtccgcatgtatatgcgtgaaatgggttcggtcgaattgctg
acgcgcgaaggtgaaatcgaaatcgcgaaacgcatcgaagatggcctgaaagatatgatt
caggctatttcggcatgcccgacaacgatcgcagaaattattcttgccgctgaaagaatt
tcaaaagacgaaatcaagatcgatgaaatcgtcgatggtctggtcgacctcaatgccacg
gacgaggcagtaacggcagccgtagcaaccgctgatgaagaaactgacgaagaagaagaa
gacgaagaagaagcggaagaggaagaggaagaagccaacagcaactccggcgcagcagga
ttctcggcagaacagcttgagcaactaaagcgcgacgcgctggccaagttcgaaaccatt
tctacgcaatttgacaagatgcgtaaagccttcgaaaaagaaggttacaactcaaaacct
tacgtcaaggcgcaagaaatcatctcgtacgaacttctcgggattcgctttaccgccaag
gttgttgaaaaactgtgcgatacattgcgcggtcaggtcgacgaagtacgcaagattgag
cgccaaattctcgacgttgcagtcaacaagtgcgacatgccgcgtctgcacttcatcaaa
gtgtttccaggcaacgaaaccaatctcgactgggttgacggtgaagtcaacggcaatcat
ccgtacagtattgtactgagccgtaacgtcccggcagtgaaagagttacagcaacgcctg
atagatctgcaagcgcgcgttgttttgccattaccagatctgcgcggcatcaacaaaaag
atgggcgctggtgagaaaaaagcccgaatggcaaaacgcgaaatgaccgaggctaacttg
cgcctggtgatttcgatcgcaaaaaaatacaccaaccgcggtctgcaattcctggatttg
attcaggaaggcaatatcggcttgatgaaagcggtcgataaatttgaataccgtcgcggc
tataaattctcgacgtacgcaacctggtggatacgtcaggcgatcacccgttcgatcgcc
gaccaggcacggactatccgaattccggttcacatgatcgaaacgatcaacaaaatgaac
cgtatttctcgtcaaattttgcaggaaaccggcgcagagcccgatccagcaacattagcg
atcaagatggaaatgccggaagataaaatccgcaagatcatgaagatcgccaaagaaccg
atttcgatggaaacaccgattggcgatgacgacgattcacatctgggcgatttcattgag
gacaacaatactctggcgccggcagatgcagcattgcacgcatccatgcgcggtgtagtc
aaagacatcctcgattcactgacaccacgcgaagccaaagtgctgcgcatgcgcttcggt
atcgaaatgtcgactgatcacacgctggaagaagtcggaaaacaatttgacgtaacgcgt
gagcgtatccgtcaaatagaagccaaagcattacgcaaactgcgtcatccttcgcgttcc
gacaagctgaagagcttccttgaaggtaactaa
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