Glaciimonas sp. PAMC28666: JQN73_20475
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Entry
JQN73_20475 CDS
T07066
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
glc
Glaciimonas sp. PAMC28666
Pathway
glc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
glc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JQN73_20475 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
glc03400
]
JQN73_20475 (ligD)
Enzymes [BR:
glc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JQN73_20475 (ligD)
DNA repair and recombination proteins [BR:
glc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JQN73_20475 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QRX82426
LinkDB
All DBs
Position
complement(4760262..4762919)
Genome browser
AA seq
885 aa
AA seq
DB search
MARSDPLKIYKTKRDFNKTTEPQDGGDTVGSGFAFVVQKHWATRLHYDFRLEFQGTMRSW
AVPKGPSFDPKDKRMAVQVEDHPIAYNQFEGEIPAKQYGAGKVIIWDRGIWQPLDDPEIG
LRDGNLKFSLQGHKLHGNWALLRIKNRDDTDTASDKNKKPTWLLIKEKDAFARPALDFSV
VDEMPDSVAKLPPPTSKNTTSPKSALKPKNVTTANRDAANATKKERKPQSPLATKKSVPI
TTEKTEKISGSKKIAMPSGAIKAPLPPKLVPQLATLVDSAPADSEDWLYEIKYDGYRLLS
RIDGKKISLITRNGHDWTEKLPALAEALREAKLPNGWYDGEIVMPGENGIPDFQALQGAF
DAKRTQRIVYFLFDLPFSSGFDLRQVPLMARRTILQSLLEKNNSQTIRFSENFEAIGADI
VKSACQLGMEGVIGKKRDAPYLSRRSPDWIKLKCSHRQEFVIGGYTDPQGSRSGLGALLL
GVHDADGKLRYAGKVGTGFDEKTLRSLTAALTAIKSEKCPFNAVSDVRPEGHWVKPELLA
EVSFAEWTKSGRIRHPVYHGLRSDKPARSIVREVPKHVEEKLGASSALPSSLKITNPERE
VDSASGITKIELLRFYALVAPLMMPHLKGRPVSLMRAPDGVGKQVFFQKHLAIAQMAGIA
QLAADLDPDHERLLEVARPEGLLSAAQMNVVEFHTWNAIKTAINKPDRMTFDLDPGEGVE
WGTMQESTLLVKALLDQLGLTSFVKTSGGKGFHIVVPIAKRHGWETVKAFSRAIVAHLVS
AIPTHFVVKSGPRNRVGKIFVDYLRNGFGATTVCAWSARARPGMGVSVPIAWDELNHVTG
GAHWTIRTIHTRLDQGNIPWDNYATSAQGLAAAMRKLGFKPDATE
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcacgttccgatccgttgaagatttacaaaaccaaacgtgattttaataaaacaaca
gaacctcaggacggcggtgacaccgtcgggtctggttttgcctttgttgtgcagaaacac
tgggccacgcgtttgcattacgacttccggcttgaattccagggcactatgcggagctgg
gcggtgcctaagggaccaagttttgatcctaaggataaacgcatggcggtgcaggttgag
gatcacccgattgcgtataaccagtttgagggtgaaattccggccaaacaatacggcgcc
ggtaaagtgattatttgggataggggtatctggcaaccgcttgatgacccggagatcgga
ttgcgtgacggtaatttaaaattttcgctgcagggtcataaattgcacgggaactgggcg
ctgctcaggataaaaaatagagacgataccgacacggcgtccgataagaacaaaaagcca
acatggttactgatcaaagaaaaagatgcgtttgcgcggccagccttggacttcagtgtg
gtcgatgaaatgccggatagcgtcgcaaaattgccgccgccgacatccaaaaacaccaca
tcgccaaaaagcgcccttaaacccaagaacgtcaccaccgccaatcgcgacgccgcgaac
gccactaaaaaggaacgcaaaccccagtcaccacttgctaccaaaaagtccgtgcccata
acaacagaaaaaacagaaaaaatatcaggttcaaaaaaaattgccatgccttctggtgcg
ataaaagcgccacttccacctaaattggttccgcaactggcaacgctggtagatagcgcg
cccgctgattccgaagactggctgtatgaaataaaatacgatgggtatcgattattgtcc
cgcattgatggaaaaaagatttccctgatcacacgcaacggccatgattggacggaaaaa
ctgccggcgttggccgaggcgctgagagaggccaaactccctaacggatggtatgacggt
gaaatcgtcatgccgggtgaaaatggcattcctgattttcaggcgttacaaggtgccttt
gacgcaaaaaggacgcaacgcattgtctattttttattcgatcttccattttcctccgga
tttgatctacgccaggtccctctgatggcgcggcgaacgatcttacaatctttgctcgaa
aagaataactcacaaacgatccgctttagtgaaaatttcgaggcaattggcgcggatatt
gtgaaatctgcttgtcaactcggaatggagggagtgattggcaaaaagcgggacgcaccc
taccttagtcgtcgctccccggactggattaaactcaagtgcagtcaccgacaggagttt
gtcatcggcggctataccgatccacagggaagccggtccggtctgggagcattgttactt
ggggtacatgatgccgatggaaaattgcgttatgcaggcaaggtaggaacaggttttgat
gaaaaaaccttgcgctcgctaacagccgcattgaccgcaataaagagtgagaaatgcccg
tttaacgccgtgagcgatgtacggcccgaagggcattgggtcaagccagaattgttagcg
gaggtctcgttcgcagagtggaccaaaagcggacggataagacatccggtttatcacgga
ttgcgcagtgataaaccggcacgatcaatcgtgcgtgaagttccaaagcatgtggaagag
aagctcggcgcttcgtctgcgctaccatcttcgttgaagattacgaatccagaacgtgag
gtagattctgccagcggcatcaccaaaatcgagcttttgcgattttatgctctggtagcg
ccattgatgatgcctcaccttaaaggacgtcccgtgtcgctgatgcgcgcccctgatggt
gtgggaaaacaggtttttttccaaaaacatttagccatcgcgcagatggctggcattgca
cagctggcggccgaccttgatcctgatcatgagcgcttacttgaggttgcgcgacccgag
ggactgttgtcggcggcacagatgaatgtggtcgagtttcatacctggaatgcgatcaag
accgcaatcaacaaaccggaccgcatgaccttcgatcttgatccgggggagggcgtggaa
tggggaaccatgcaagaatcaaccttgctcgtcaaagcgctcctcgatcagttaggactg
acatcgttcgtgaaaactagcggcgggaaaggcttccatatcgtcgtgccgattgcgaag
cggcacggctgggaaactgtcaaggcattctcacgcgctatcgttgcgcatctggtctca
gcaataccaacgcattttgtggtgaaaagtggcccgcgtaatcgcgtcggaaaaatcttc
gtcgactatcttcgtaatggttttggggccaccaccgtatgcgcatggtctgcgcgcgcc
aggccgggaatgggcgtctcggtaccgatcgcatgggacgaactgaatcacgtgaccggt
ggagcgcactggaccatccgcaccattcatactcgtctcgatcaagggaatattccttgg
gacaactatgccacctctgcgcaaggcttggcggccgcaatgcgcaaactaggtttcaag
ccggatgcgacggagtaa
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