Glarea lozoyensis: GLAREA_04835
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Entry
GLAREA_04835 CDS
T04883
Name
(RefSeq) PH
KO
K12609
CCR4-NOT transcriptional complex subunit CAF120
Organism
glz
Glarea lozoyensis
Pathway
glz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLAREA_04835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glz03019
]
GLAREA_04835
Messenger RNA biogenesis [BR:
glz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GLAREA_04835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH
PH_9
Motif
Other DBs
NCBI-GeneID:
19463890
NCBI-ProteinID:
XP_008085403
UniProt:
S3CSJ2
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MSSGKMGTRNRVLSFMSKFSDRESSPSSSQTPPPPPRQESSKPPTRDNVREVSPAMPSSS
NYNMDGASSSQTRNGRERAVSSSRPMSMVQTYQPPLMDVNEDTLPELQPIFTFLNSHANK
LYQEGYFLKLDDQNTHGKANADRTWTECFAQLVGTVLSLWDAAELDTAGQDGEVLPKFIN
LTDASIKMIESLPTRSSNEEPLQNVLSVSTAGRNRYLLHFNSHHSLVQWTAGIRLAMFEH
ATLQEAYTGALIAGKGKGLNNIGVILERAKVKHEDWARVRFGAGTPWRRCWCVITPPDEK
EVLKLQKQANKKKSAYDKTRLPVLRGDVKFYDTKKTKKMRPIATVTDAYSAFAIYPQSKP
LIDASTLIKMEGVITIHSNPPSTTEGFVFVMPEVHPAVSGFEMMLRWLFPVYDTFALYGR
PGRLIADTLDPQSLMFAMPKHRRYGYLEILDVTGLIVEQGSATWRESEWRRRMKELTKKR
MTAIESGSHANSRYSSRRSARNSFGPSRTRLQFDDEASVRSSPSTSWGPPHPNDVPNPLP
RTDSAPATAGTFNPARQVGTHHRSVSETQGLDRYGNESPVSAYDGPYEQAPIPPPHAIGV
NPSNPGSGLRYPLDLSVPDRNSSEDDRSARATPVRELQELQATSSPEPVAAPPAFNHGPG
AKPISKPYHSPELRRANSRMSNATLSQMTGASGTAAAIAAQGEMGRTSADHGRQNVSSHT
EDRSQRGVPQNANTPNDFLANQRGMNEGLVTSNNERFSFEKSHASQPSNFDSRAQYSPPP
RLDSLNSAHSIPPVNEQPPPPPTHNANTSPPRTYNPPGIFSSPERAVQDPRSQGHNPQQS
VDSTTSTISQSQYPNKLQTSQSILRKPLPTRTATLKTQSSEDDANSPSDTGSLINHVIDQ
DAFDMIGLDNRTQTLRSENQIHRQNSDASIYEDNASTASPDYASTRPSIDSRKSQKSVER
PRAGVKKTVGNPESNLSQMENARMSIPDINFGPTINYAAGRPPIRSHSPGLVQSYSSDRS
RSGGTSPGPAMNNYPPDRAPRHNSQSGRPESAGGRTRYESRSTITPETAHYRNSSAESRT
LAWQPGMAVSASPAQAPQSITAEQFVAQRAAAAIATPQYAHQRQSSSNALARTTVGRATP
DRNSTTPPLARNRSSDYLTQQGHSRNSSTDMLARPSSRGASATLSPAVAAEASSKLSARE
QEHIARATGQPLISVANNNKRLSMHQPGLVGAIEAREMEKQQIKQGINSQAVEHAIHKRQ
QQQLYEQQQQYHQQQQMQTAYRQPQSYNMGQFQQQQYPVHGQQYQAHPQQQQFQTQGQSP
GWGTSPAASVFAQGGGWTQSPGYAQPSPGYSQQSPAGRQSPGYPQPSPGFTPQSQTGRQS
PGRFPAQQQYFPPQGQGRGNQNHGY
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcggcaagatgggtactcgaaatcgagtactttccttcatgtccaaattctct
gatcgagagtcgtccccgtcctccagccagacacctcctcccccgccgcggcaggaatcc
tccaagccaccgaccagagacaatgtgagggaagtttctccggccatgccctcgagcagt
aactataacatggatggggcatcgtcttcacagacaagaaatggacgagagcgggcagtc
tcctcctctaggccaatgtcgatggtgcaaacataccagcctcctctcatggatgtaaat
gaggatacactaccagaattacaaccgattttcacgtttttgaacagccatgcgaacaag
ttgtaccaggagggatactttttgaagttggatgaccaaaacacccatggcaaagcaaat
gcggaccgcacttggacagaatgttttgcacaactggttggaacggtcctctcgttgtgg
gatgctgcagaactggacactgcgggacaggatggcgaagttctacccaaattcatcaac
ctgacggatgcttcgatcaaaatgattgaatccttacccacacgatcaagcaatgaagag
ccgttgcaaaatgtcctcagcgtttccaccgctggccgaaatcgctatctcttacatttc
aattcgcatcactccttagttcaatggactgcaggtattaggcttgcaatgtttgagcac
gccactctccaagaagcatataccggcgctctgattgcaggcaaaggcaaaggtctgaac
aatattggtgtcattttggaacgcgccaaggtcaagcatgaagattgggctagagttcga
ttcggagcaggaacaccatggagacgatgctggtgtgtcattacaccacctgatgagaag
gaagttctcaaactccaaaaacaagccaacaaaaagaaatctgcatatgataagacaaga
ttgcctgtcctgagaggagacgtcaagttttacgatacgaagaagaccaagaaaatgcgg
ccaattgcgacagtcacagacgcctactcggcatttgccatctatcctcagtcgaaaccg
ctgatcgatgcctctactctcattaagatggaaggtgtaataacgatacattccaatcct
ccatctacgactgaagggttcgttttcgttatgccagaagtacacccagctgtttcaggg
tttgagatgatgctcaggtggttattccctgtctatgatacatttgcgttgtacggccgt
ccaggaagattgattgcagatactctggatcctcaaagcttgatgtttgctatgccaaag
caccgcagatatggatatttggaaattttagatgtgacaggtcttatagtcgagcaagga
agcgcaacatggagagaatccgagtggagacggaggatgaaggaacttaccaagaagcgg
atgactgcaatcgagagcggaagccatgcgaatagtaggtatagcagtagaagaagcgct
cgtaacagctttggaccgtcacgcacccggttacaattcgatgatgaggcatctgtcaga
tcttcgccttcgacttcctggggtcctccacatccaaacgatgtgccaaaccctctgcca
cgaaccgactctgctcctgccactgctggaacttttaatccagctcgccaagtgggcacc
caccacaggtcagtctctgaaacccaagggttggatcgctatggaaacgaaagcccagtt
tctgcatacgatggaccatatgagcaggctccaattccaccgccacatgcaattggagtt
aatcctagtaacccaggctctggtctccggtaccccttggatctgtctgtccccgaccgt
aatagttcagaggatgatcgttctgcaagagcaactcctgtgcgagagcttcaggagtta
caagcaacatcttcgccagagccagtcgccgctcctccagcttttaaccatggtcctggt
gctaaacctatcagcaaaccatatcattcgccagagcttcgacgagccaactctcggatg
tccaatgcaacattatctcaaatgacaggcgccagtggtactgctgctgccattgctgcg
caaggagaaatgggaaggacaagcgcggatcatgggcgccagaacgtgagttcacacacg
gaggacaggagccagagaggggtaccacaaaacgccaacaccccaaatgattttcttgct
aaccaacgtggtatgaatgaaggcttggtaacgtcaaacaatgaacggttttccttcgag
aagtctcacgcctcgcagccttccaatttcgattctcgagcacaatattcgcccccacca
cgacttgactccctgaattccgcgcattcgattcctccagttaatgagcaacctcctccg
ccaccaacacataatgctaatacgtctccgcctcgtacatataatcctccgggtattttc
tcttcgccagagcgagcggtccaggatccgcgatctcagggccataacccacagcaatcc
gtggattctaccacaagcacaatttcacaatcacaatatccaaataaacttcaaacgagc
caaagtatattacggaagcctttgcctacgcgaactgcaacactaaaaactcaaagctca
gaagacgatgccaattcgccttcagacactggtagcttgataaatcatgtcatcgaccag
gatgcttttgatatgattggtcttgataacagaacacaaacattacgctccgagaaccag
atccatcgacagaacagtgacgccagtatatacgaggataatgcttccactgcatctcct
gactatgccagcactcggccctctatagacagcagaaaatctcagaaatccgtcgaaaga
ccacgagctggagtgaagaagacggttggtaacccagaatcgaatctcagccaaatggag
aatgctcgcatgtcgataccagatatcaattttggtccaactataaattatgctgccgga
aggcctcctattcgaagccacagcccgggtctcgtgcaaagctattcgtcagatagatcc
cgatcaggcggtacgtctcctgggcctgctatgaataattatcctccggatagagctcca
cgtcacaacagtcaatcaggacgacctgagagtgctggtgggcgaacaagatatgagagt
agaagtactattactccagagactgcccattatcgcaacagttccgccgagagtaggaca
ttagcatggcaaccgggtatggcggttagtgcgtcgcctgcgcaggctcctcaaagcatt
acagcagaacaatttgtcgctcagcgagctgctgctgcgattgcaacaccgcagtatgct
catcaacgtcaatcatctagtaatgctctagctcgtacaactgtcggacgtgcaacacca
gatcgcaactcgaccacacctcctctagcccgcaaccgctcgagcgactacttgactcaa
caaggtcattctcgaaatagttctacagacatgttagcacgacccagctcaagaggtgct
agtgctacgcttagtccggcggtggccgctgaggcatcgtcaaaattatctgctcgtgag
caagagcatattgcgcgagcgaccggccagcctctcatcagcgtcgcgaacaataataag
cgtctgtccatgcatcagcccggtctagtgggagcaatcgaggctcgggaaatggagaag
cagcaaatcaagcagggcattaatagccaggccgtcgaacacgctattcataagcgtcag
caacagcagctttatgaacagcaacaacagtatcatcaacaacaacaaatgcagacagcg
tatcgtcagccgcagtcttacaatatggggcaattccagcagcagcagtacccagtccac
ggtcaacagtaccaggcgcatcctcaacagcaacagtttcaaacgcaaggacaaagtcca
ggctggggaacgtctccagcagcgagtgtctttgctcaaggtggggggtggactcagtcc
cccggatatgctcaaccatcacccggatattctcagcaatctcccgctggtagacagtca
cctggttaccctcaaccatcgccggggtttacgccgcaatcacagactggaagacaatca
cccggtcgatttccagcgcagcagcaatatttccctcctcaaggacaaggacgtggaaat
cagaatcatggatattaa
DBGET
integrated database retrieval system
