Granulicella mallensis: AciX8_1368
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Entry
AciX8_1368 CDS
T01664
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gma
Granulicella mallensis
Pathway
gma03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AciX8_1368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gma03400
]
AciX8_1368
Enzymes [BR:
gma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AciX8_1368
DNA repair and recombination proteins [BR:
gma03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AciX8_1368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEU35711
UniProt:
G8NZZ5
LinkDB
All DBs
Position
complement(1590562..1593324)
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AA seq
920 aa
AA seq
DB search
MAPTKKAVSRKPASKKTAAKRTPHKTHASAADAVDEQLARYREMRDFKVTAEPSGKGKST
KAKASGLPFVIQKHAASHLHYDFRLGWNGVLKSWAVAKGPSYFTGDRRLAVQVEDHPMEY
GGFEGIIPKGQYGGGTVMVWDQGTWEPQPGHEDVDAGLREGSLKFVMHGTKMTGKWTLVR
MGGKAANERKPNWLLIKEHDEFERGKDDPSITDEAPDSAVTGRTLDQIAGQEDHVWNSKD
TARGKAWHRQKPAAPEKKAQSPRSPKAKNDAALKDLPRETQPAFLSPQLALEATGPPGKE
GWLHELKLDGYRIQARKSGSDVQLLTRKGLDWTHRMPAIAKDITKLPAENATLDGEVVVV
SENGTTSFANLQASFQDGEKHPLTYFCFDLLHLNGRNTRGLSLRERKALLAEILGEGIGS
VHLSEHIETGGESMFHQACELHAEGIISKWGASTYSSGRSGEWLKSKCLREQEFVIGGYT
LSSEGPDRIGSLLLGYYRDGKLIYSGRTGTGFTQKTRRTLRKQLGDLENRSMPFARVPVD
GRRDAIWVKPKLVAQVRFATWTADNLVRQAAFLGLREDKPAKEVQREEATVAPQPKGTSK
RPAKTAPVVATHRAAVPIAAKTATKTATTGSIRLTHPDKILDAESGLTKADLSAFYQGVA
EHMLPHIADRPLSLVRCPEGTGKPCFFQKHVNHMLPPGVGGIDVPNKKTGEPEPYITLNT
TEALINLAQMGVLEVHPWGSRNDDLEHPDRLIFDLDPDESLPWSTLCDAAAEVRKRLKKA
GLESFLKTTGGKGLHVVAPIQPELDWPQLKALAHKFVESMERENPTLYLTKMTKSARKGK
IYLDYLRNERGATAVAPYSPRARAGAHVSLPLPWSALKLPERPVYSVKNFDEWRSRLRND
PWKAMLTTRQKLDPASFEQA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacaaaaaaagccgtgtcgcggaagccagccagcaaaaaaacagccgctaag
aggaccccgcacaaaacacacgcctcggctgcggatgccgtcgatgaacagcttgcgcgt
tatcgcgagatgcgtgacttcaaggtcacagccgaacccagcggcaaaggcaaatctacg
aaagccaaagcctccggccttccgttcgtgattcaaaagcacgctgcgagccacctgcac
tacgacttccgcctcggctggaacggcgtgctgaagagctgggcggtcgcgaagggcccc
agctacttcaccggcgaccgccggctcgcggtccaggtagaagaccatccgatggagtac
ggtggcttcgagggcatcatccccaaagggcaatacggcggcggcaccgtcatggtgtgg
gatcagggcacgtgggagccgcagcccgggcacgaggacgtcgatgccggtctgcgcgaa
ggcagtctgaagttcgtgatgcatggcacaaagatgacgggcaagtggacgctcgtgcgc
atgggtggcaaagccgccaacgagcgcaagccgaactggctgctcatcaaggagcacgac
gagttcgaacgcggcaaggacgatccctccatcaccgacgaagcgcccgactccgccgtg
actggccgcacactggatcagatcgcaggacaggaagaccacgtttggaactccaaggac
accgcacgcggcaaggcctggcacagacagaaacccgctgcaccagaaaaaaaggcgcaa
tccccgagatcgccgaaggcaaagaatgacgctgcgctcaaagatctacccagggagacg
caacccgcatttctttcgccgcagctcgcactcgaggctacaggacctcccgggaaagag
ggctggctgcatgagctgaagctcgacggctatcgcatccaggcgcgcaaatctggcagt
gacgttcagctgctcacacgcaagggtctcgattggacccaccgcatgcccgctatcgcg
aaggacatcacgaagctgcccgccgagaacgcaacactcgacggagaggtggtcgtggtc
agtgaaaacggcaccaccagcttcgccaatctgcaggcctcatttcaggatggagagaag
catcctctgacctacttctgcttcgacctgctgcacctcaacggccgcaacacccgaggt
ctgagcctgcgcgaacgcaaagctctgctagcggagattcttggcgaaggcatcggctca
gttcacctgagcgagcacatcgagaccggcggcgaatccatgttccaccaggcctgcgag
cttcatgcagaaggcatcatctccaagtggggcgcttcgacatactcctccggccgcagc
ggggagtggctcaagtccaaatgccttcgcgaacaggagttcgttatcggtggctataca
ctctcctccgaaggcccggaccgcatcggctcccttctcctgggctactaccgcgacggc
aaactaatctattcaggccgcacgggcacaggctttacacaaaagacaagacgcacgtta
cgcaaacaacttggtgatttagaaaacaggtccatgcccttcgcccgagttcccgtagat
gggcgcagagatgctatctgggtgaaacctaagctcgttgcgcaggtccggtttgccacc
tggacggcggacaatctcgtgcgtcaagccgcatttcttggattgcgcgaagacaaaccc
gctaaggaagttcaacgggaagaagcaaccgtcgcacctcagcccaaaggaacatcgaag
cgtccagcgaaaactgcacccgtagtagccacgcatcgagcagccgtacccatcgccgcc
aagacagcgacgaaaacggcaacaacaggttcgatacgtctcacccatccggacaagatc
ctcgacgctgagagcggcctcaccaaggcggacctatccgcgttctaccagggcgtcgcc
gagcacatgttgccgcacatcgccgaccggcctctcagccttgtgcgctgtcctgagggc
acgggcaaaccctgtttcttccaaaagcacgtcaatcacatgctgccgccgggtgtcgga
ggcatcgacgtcccgaataaaaagaccggagagccggagccctacatcacactcaacaca
acggaagcgctcatcaacctggcacagatgggcgtgctggaagtgcatccgtggggttcg
cgcaacgacgatctcgaacatcctgaccggctgatcttcgacctcgatccagatgaatcg
ctgccatggtcgacgctctgcgacgcagcagcggaggtccgcaaacgcttgaagaaagca
ggcctggaaagctttctaaagaccaccggcggcaaaggattacacgtcgtcgctcccatc
cagcccgagttagattggccacagctcaaagcgctggctcacaagttcgtcgagagcatg
gaaagagagaatcccacgctttatctaacgaagatgaccaagtccgcgcgcaagggaaag
atctatctcgactatctgcgcaatgaacgcggggcaaccgcagtcgctccctactcgcca
cgcgcccgtgcgggagcgcatgtttcgctgcccttaccgtggtccgcgttgaagctcccg
gagcgtcccgtgtactccgtcaagaacttcgacgaatggcgctcgcgactccgcaacgat
ccatggaaggcgatgctgacgactcgtcagaagctcgatcctgcaagttttgagcaggca
tga
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