Geobacillus sp. Y4.1MC1: GY4MC1_0839
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Entry
GY4MC1_0839 CDS
T01348
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gmc
Geobacillus sp. Y4.1MC1
Pathway
gmc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GY4MC1_0839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmc03400
]
GY4MC1_0839
Enzymes [BR:
gmc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GY4MC1_0839
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GY4MC1_0839
DNA repair and recombination proteins [BR:
gmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GY4MC1_0839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ADP73654
UniProt:
A0A7U3YD70
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All DBs
Position
844311..845135
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AA seq
274 aa
AA seq
DB search
MPELPEVETIRRTLIPLAAGKTVADVQVFWPRIIKHPANISEFIETIKGQTIRDIHRRGK
FLKFIFDEHVLISHLRMEGRYAVSKKKDAIEPHTHVIFQFTDGTELRYRDVRKFGTMHLY
PKGEEDSRLPLSQLGPEPFSEEFTANFLAKRLRKTNRTIKAALLDQTVVVGFGNIYVDEA
LFRAGIHPERAASSLTDEEAACLHREMVATLQEAVEKGGSTVRSYVNTQGEIGMFQLQLF
VYGRKGEPCKRCGNPIQKTVVAGRGTHYCAFCQH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactgccggaagttgaaacgattcgccgcactctcattccgttagccgctggc
aaaaccgttgccgatgttcaagtgttctggccgagaatcataaaacatccggcaaatatt
agtgaatttatagaaacgataaaaggacaaacgattcgtgacattcatcggcggggaaaa
tttttaaaatttatttttgatgaacatgtgcttatttcccatttgcgcatggaagggcgt
tatgcggtttcgaaaaagaaagatgccatcgagccgcatacgcacgtgatttttcagttt
acagacggcaccgaacttcgctatcgtgacgtaagaaaattcgggacgatgcatctttat
ccgaaaggagaagaagattcccggcttcctttgtcacagttaggcccagaaccgttttcg
gaagagtttaccgcaaattttcttgcaaagcggctgcgaaaaacgaaccgaacgatcaaa
gcggcgctgcttgaccaaaccgtggtcgtcgggttcggcaacatttatgtcgatgaagcg
ctgttccgcgccggaatccatccggaacgcgctgcgtcatcattaacggatgaggaggcg
gcatgtttgcatcgggaaatggtggcaacattgcaagaagcggtcgaaaaaggaggaagc
acggtaaggtcatacgtcaacacgcaaggggaaatcggaatgtttcaattgcagttattc
gtgtacgggcgcaaaggagaaccgtgcaaacgctgcggcaacccgattcaaaaaacggtg
gttgccggccggggcactcattattgcgccttttgccagcattaa
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