KEGG   Girardinichthys multiradiatus (darkedged splitfin): 124856630
Entry
124856630         CDS       T08099                                 
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
  KO
K19719  collagen type II alpha
Organism
gmu  Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510  Focal adhesion
gmu04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:gmu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    124856630 (col2a1b)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    124856630 (col2a1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:gmu00536]
    124856630 (col2a1b)
Glycosaminoglycan binding proteins [BR:gmu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   124856630 (col2a1b)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 124856630
NCBI-ProteinID: XP_047203247
LinkDB
Position
20:complement(17158570..17222657)
AA seq 1491 aa
MLSFMDFRTVLLLVASQACLLAVVRCQRDDDQEEGTVCNVEGQRFYDKDIWKPEPCRICV
CDTGAVLCDDIVCEELKDCPKPEIPFGECCPICPADQLPPFGVPESKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGPRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLS
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGSPGEAGEPGQA
GPMGPRGPAGPPGKPGDDGEPGKPGKSGDRGPTGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGAKGEAGAPGESGTPGPMGPRGLPGERGRPGSTGAAGARGNDGLSGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GSKGSAGAPGIAGATGFPGPRGPPGPQGATGPLGPKGTAGDPGISGFKGEAGPKGEIGPA
GPQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGTPGNRGFPGQDGLVGQKGAPGERGPP
GASGAKGATGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLAGVPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGSAGGPGAQGPPGLQGMPGERGTAGIPGPKGDRGDVGEKGPE
GASGKDGGRGLTGPIGPPGPAGPNGEKGESGSAGPSGPAGVRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGEAGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPSGPAGSPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDAGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSSGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDLGNTGPAGAPGAPGGPGAP
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMLGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGTPGQPGDQGATGPAGPSGQRGPPGPVGPSGKDGANGLPGPIGPPGPRGRSGDS
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVNAKPAKIPRKNWWSSKSKERKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYLDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
SCARHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL
NT seq 4476 nt   +upstreamnt  +downstreamnt
atgttgagctttatggatttcaggactgtactgcttcttgtagcatcccaagcttgtcta
ttagccgtggtgagatgtcagcgggacgatgaccaggaggagggtactgtctgtaatgtc
gaaggacagcgtttttatgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggagcagtcctgtgtgatgacattgtctgcgaggagctaaaagactgccca
aaacctgaaatcccatttggagagtgttgccccatctgccctgctgaccagctaccacct
tttggagtaccagaaagtaagggtcagaagggtgaacctggagacattacagatgttgta
ggaccaagaggaccatccggcccaatgggcccaccaggagagcagggaccccggggaccg
agaggagataaaggagagaagggaagccctggtcctcgtggcagagatggtgaacctggc
acccctggaaatcctggaccccctggacctccaggacctaatggaccccctggccttagt
ggaaactttgctgctcagatggcgggtggtttcgacgagaaagctggcggtgcacagatg
ggcgtgatgcaaggaccaatgggcccaatgggacccaggggaccacctggccccacagga
tcacctggcccacaaggtttccaaggcagcccaggagaggccggagagcctggacaagct
ggccccatgggtccccgtggccctgctggacctcctggaaaacccggagatgatggtgaa
ccaggtaaaccagggaaatcaggtgaccgtggacccaccggacctcagggagctcgtggt
ttcccaggaactccgggtctgccgggcatcaagggacacagaggttatccaggtcttgac
ggtgcaaagggagaaactggtgctgttggtgctaagggtgaggctggtgctccaggcgag
agcggcacacctggacccatgggaccgcgtggtttgcctggggagcgaggacgtcccgga
tccactggagctgctggtgcacgtggtaatgacggcttgtctggtcctgctggtcctcca
ggtccagttggtcctgctggagctccgggcttccctggatctcctggatcaaagggtgaa
gctggtcctaccggcgcccgtggccctgagggagcccagggaccccgtggagagtctggc
actcctgggtcacctggaccgtctggtgcctctggtaaccctggtactgatggtatccct
ggatcaaaaggctcagcaggtgctccaggtattgcaggtgctactggtttccccggacct
cgcgggcctcctggacctcagggagcgactggacctcttgggccaaaaggaacagctgga
gacccaggtatttcaggattcaagggtgaggctggacccaaaggagaaattggcccggca
ggccctcagggagcccctggcccacaaggagaagaaggcaagagaggacccagaggtgag
cctggtgctgctggacctcttggacctccaggagaaagaggaactcctggtaaccgtggt
ttccctggtcaggatggtcttgttggtcagaagggagcccctggtgagcgcggaccccct
ggggccagtggtgcaaagggggccactggtgaccctggccgtcccggagagtctggactt
cctggtgcaaggggtctgactggtcgtcctggtgatgctggacctcagggcaaagtcgga
ccttctggagctcctggtgaggatggacgtccaggaccccctggtcctcagggagccaga
ggacagcctggtgttatgggattccccggaccaaagggagcaactggtgaacccggtaaa
tctggtgagaaaggactggctggagttcctggccttaggggtctgcctggaaaagatgga
gaaacgggcgcggctggaccccctggccctgctggccctgctggggagagaggagagcaa
ggacagcccggtccctctggttttcagggtcttcccggacctcctggccctcccggtgag
ggaggcaaacctggagaccagggcgttccaggagaagctggagctgctggtgccaccgga
cccagaggagagcgtggttttcctggagagagaggagctgctggtccccagggtttgcag
ggacccaggggcctgcctggaactcctggaactgacggacccaagggagccattggatcg
gctggtggtccaggagctcagggaccgccaggcttgcaaggtatgccaggagagagagga
actgctggcattcctggacccaaaggagacagaggggatgttggagagaaagggcctgaa
ggtgcctccggcaaagatggtggcagaggtcttactggtccaattggtcctcctggtcct
gctggtccaaatggcgagaagggtgaatctggatctgcgggaccttctggccctgctggt
gttcgtggtgcacctggtgacagaggagagactggacctcctgggcctgctgggtttgct
ggacctccgggggctgacgggcagcctggaaccaagggagagcaaggagaagctggacag
aagggagatgctggagcccctggaccccaaggaccatctggtgcccctggacctgcaggt
cctacaggagtttctggacctaaaggggctcgtggtgctcaaggtcctcctggtgccact
ggtttccctggagctgctgggcgagttggacctcctggccccaatggtaaccctggaccc
tcaggtcctgccggctctcctggtaaagatggaccaaaaggtgtgagaggggatggcgga
cctccaggcagacaaggtgatgctggactacgtggtcctgcaggagctccaggagagaag
ggagatgctggagaggacggacctcctggtccgctaggtccctcgggtcctcagggattg
gctggtcagcgcggcattgttggtctgcccggacagagaggtgaaagaggtttccctggt
ctgcctggaccttctggtgagcctggaaagcagggatcttctggcggtcccggagaccgt
ggacctcctggacccgttggaccacctgggcttactggacctgctggagaacctggcaga
gagggcaaccctggatctgacggacctcctggtagagatggatctcctggaattaagggt
gaccttggcaacactggtcctgctggtgctcctggtgctccgggtggtcctggtgctccc
ggcccagtcgggcccactggaaaacagggagacagaggggagtctggtgcccaaggacca
gcaggacctccaggacctgccggtgccagaggaatgcttggaccccaaggaccccgtggt
gataagggtgaagctggggagtctggtgagagaggacaaaagggacacagaggtttcact
ggtctgcagggtctccctggaacaccaggtcaacctggagaccagggcgccactggacct
gctgggccttctggacaaaggggaccacctggacctgttggtccttctggaaaagatggt
gcaaatggtttaccaggacccatcggacctcccggacctcgtggtcgttctggagactct
ggtccctctggtcctcctggaaaccctggaccccctggtcctcctggtccccctggtcct
ggtattgacatgtctgcctttgctggtctgggtcaaacagaaaagtctcccgatcctctc
aggtacatgagggccgaccaggcctccggaaatcttcgtcaacatgatgccgaggttgat
gccactctcaaatctctcaacaatcaaattgagaacatccgaagcccagaggggtccaag
aagaatcctgcccgcacctgcagagatctgaagctgtgccatcccgactggaagagcggt
gaatactggatcgatcccaatcagggctgcaccgtagatgcaatcaaggtcttctgcaac
atggagaccggggagtcctgtgtgaacgccaagcctgccaagatcccacgcaagaactgg
tggtccagcaagagcaaagaacgcaagcatgtctggtttggagagacaatgaatggagga
ttccatttcagttatggggacgacagcctggctcccaacactgccgccattcagatgact
ttcctgaggttgctgtccaccgaggcttcccaaaatctcacttaccactgtaagaacagc
gtggcctacttggacgcctcaacaggcaacctgaagaaggccgtgctgctgcagggctcc
aatgatgtggagatcagagccgagggcaacagtcgcttcacctacagcgtcatggaagat
agttgcgcgagacacacggggcagtggggtaagacagtgattgaatacaggtcgcagaag
acctctcgtctgcccattgtggacattgcacccatggatattggtggagcagatcaggag
tttggagttgatgttgggccagtttgcttcttgtaa

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