Girardinichthys multiradiatus (darkedged splitfin): 124869853
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Entry
124869853 CDS
T08099
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124869853
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124869853
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124869853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
124869853
NCBI-ProteinID:
XP_047223972
LinkDB
All DBs
Position
6:34509623..34643266
Genome browser
AA seq
1819 aa
AA seq
DB search
MEMQRWTIRWKTKRRLLDSTLAAVGTLILILQSVRAADPVDVLKALDFQSSPEGVRKTQG
FCTVRRGSKPDVAYRVAKSAQISAPTKQLFPGGVFPEDFSILFTIKPKAGLQSFLLSVYN
QKGIQQLGVEVGRAPVLLYEDQHGKPVPEEYPLFRSINLADGKWHRVAISVEKKSVTIIV
DCKKKVTKPLKRSDQAMINTDGITVFGTRILDDEVFEGDIQQLLIAADPRAAYDYCEHYS
PDCESPSHHDTPQAQEPEEEYPVYDYGEFYDYSEGGVATDAPPTSGAKTETNTGGEYYTD
EYDYTIVDGSQPKPPIESSKQGETYDTEIVDDYITGVDEVGLDPTVPVEAAVPVDPTVIV
DPETDVKEFKEYDVKEYDTKEFVEKPDYGNYGDYGDYGPTDAKPTPEAYEDEFAGVPAEK
DFSVSGGHNYLGQKGEKGEPAVIEPGMLLEGPQGAPGPAGVSGNPGLQGPPGTPGDPGER
GPPGRPGIPGSDGIPGPPGTILMLPFRAGGEAHKGPVITAQEAQAQAILSQTRLTMRGPP
GPVGMAGRSGPLGSPGAAGLKGDSGDSGPQGPRGLQGPTGPPGKAGKRGRNGADGARGMP
GESGAKGDRGFDGLPGLPGEKGHRGEHGPTGPPGSPGEDGPRGEDGQVGQRGVAGESGPR
GLLGPRGSTGPPGQPGLSGLDGQPGPKGNMGPQGEPGPPGQQGLPGPHGLVGPQGPIGPP
GEKGPQGKQGLPGLAGADGPPGHPGKEGPPGEKGSTGFPGPIGSIGYPGPRGVKGAEGVR
GVRGDKGEKGEDGFPGFKGDMGIKGDKGEDGIHGPRGEDGPEGPKGKAGPGGEAGPIGLA
GEKGKLGVPGLPGYPGRQGPKGSNGFPGFPGANGDKGARGIAGKSGPRGQRGPTGPRGGR
GARGPTGKPGAKGTSGGDGPPGPPGERGPQGPQGPVGLPGPKGPNGPPGKDGLPGHPGQR
GETGFQGKTGPPGPGGVVGPQGPTGETGPNGERGHPGSPGPPGEQGLPGAAGKEGGKGDP
GPSGHSGKVGPAGLKGFQGSRGLPGAMGPGGLKGGEGPQGPPGPIGSPGERGPAGPGGPI
GQTGRNGPQGPPGPAGEKGAPGEKGPMGPAGRDGIQGPVGLPGPAGPQGPPGEDGDKGDV
GGPGQKGSKGDKGERGPPGSTGLQGVIGAPGPAGSDGEAGPRGQQGMFGQKGDEGPRGFP
GLPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGSDGAQGPPGGIGSMGGV
GEKGETGEAGNPGPPGEPGIQGLRGEIGEKGETGPPGAAGPPGGRGPPGDDGPKGNPGPV
GFPGDPGPPGEPGAGGLDGLPGDKGDDGEAGQPGPPGPSGEAGVPGPPGKRGAVGPAGQE
GRQGEKGSKGEAGAEGPVGKTGPVGPQGPPGKPGAEGLRGIPGPVGEQGLPGASGQDGPP
GPIGPPGLPGMKGDSGSKGEKGHPGLIGLIGPPGEPGEKGDRGLPGPQGAAGGKGESGTG
GAQGPLGPPGPPGISGAQGQKGSKGSLGSAGQKGDPGLLGPPGPPGPPGDIIQSLPIQQP
GKKSRRQADLQGDEALADYGMEGPGMEGMDDVFGSLNNLKQDIERMKFPMGTQDNPARTC
NDLHLSQPEIPDGEYWIDPNQGCIGDAIKVFCNFTAGGETCIYPDKKSTGVRISNWPKES
PGSWFSEFKRGKILNYVDIGDNSLNAVQMTFLKLLSSSARQNFTYICHQSVAWYDAKADN
YDRALRFLGSNDEELSYDNNPFIKSLMDGCSMKQGYSRTVLEINTPRIDQLPIIDVMLND
FGQSNQRFGFEVGPVCFLG
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaagatggaccatcaggtggaaaacgaaaaggcgtctattagattcaacg
ctagccgctgttggcactttaattctaattctacaaagtgtcagagcagctgatcctgtc
gatgtactaaaagcgctggactttcagagctctcctgaaggagtccggaaaacacaaggt
ttctgcacagtgcggagaggatctaaacctgacgtagcttatagagtggccaaaagtgct
cagatcagtgctccaaccaaacagctcttcccaggaggggttttccctgaagatttttct
attctgttcaccatcaagcccaaggctggactccagtctttccttttatctgtatacaac
caaaaaggcatccagcagctaggagttgaggtgggccgggcccccgtcttgctgtatgag
gaccagcatggcaaacccgtcccagaggagtaccctttgttccgctccatcaaccttgct
gatggcaaatggcacagagttgccatcagcgttgaaaagaagagcgttaccatcattgtg
gactgtaagaagaaggtgaccaaaccacttaaaagaagcgaccaagccatgatcaacact
gatggcataactgtcttcggcaccagaatcctggatgacgaggtctttgagggtgatatt
cagcagcttttgatagcggcagaccccagggcagcctacgactactgtgaacactacagc
cctgattgtgaatcacccagccaccatgacaccccacaggcccaggaaccagaggaagag
tatccagtctatgactatggtgaattttatgactacagtgaagggggggtagccactgat
gctccccctacctctggagcaaagactgagacaaatactggtggagaatattacactgac
gagtatgactacaccatagtggatggtagtcagcctaaacctccgattgaatcttccaaa
caaggcgagacttacgatacggaaattgtggatgattacatcactggtgttgatgaggtc
ggactggaccccaccgttcctgtggaagctgctgttcctgtggaccccacagtgatagtg
gatcctgaaactgatgtaaaagaattcaaggaatacgacgtgaaagaatacgataccaag
gagtttgtggagaaacctgactatggcaattatggggattatggtgattacggtcccacc
gatgcaaagccaactcctgaagcttatgaggatgagtttgctggtgttccagcggagaaa
gacttcagtgtgagtgggggtcacaattacttgggacagaaaggagagaaaggtgaacct
gctgtcattgagcctgggatgctattagaaggaccccaaggagcccctggtccagcaggt
gtttctggtaatccaggattgcaaggacccccaggtaccccaggagatcctggtgagagg
ggtcctccaggccgtcctggtattccaggttcagatggcatccctggtcctccgggtacc
attctgatgctaccattccgtgcggggggtgaggcacataagggacctgtgataacagcc
caagaagctcaggctcaggctatcctgtctcaaactagactaacaatgagaggaccccca
ggaccagtgggaatggcgggaagatctggacctttgggatcccctggggctgctggactc
aaaggtgacagcggtgactctgggccacaggggccaagaggtctccaaggtccaactggt
cccccagggaaagcaggaaagaggggtcgcaatggagctgatggtgcacgaggaatgcca
ggagaatcaggcgccaagggcgacagagggtttgatggcctccctggtcttcctggagag
aaaggacacaggggagaacatggccccactgggcctccagggtctccaggagaggacggg
ccaagaggtgaagatggtcaggttggacagagaggagtggctggagagagtggccccaga
ggtttgcttggccctagagggtccacaggtcctccaggacaacctggtctttctggcctg
gatggacaacctggtcccaaaggaaacatgggtccacaaggagagccaggtcctcctgga
caacaaggcctacctggtccgcatggtctcgttggtcctcaaggtccaattggtcctcct
ggtgaaaaaggacctcaaggaaagcaaggtctgcctggacttgccggtgccgatggccct
cctggtcaccctgggaaagagggaccccctggagagaaaggatccacaggctttcctggt
cctataggatccattggctatcctggtcctcgtggtgtaaaaggcgcggagggagttcga
ggtgtcagaggtgacaaaggagaaaagggagaagatggatttcctggtttcaaaggggac
atgggaatcaagggggacaagggtgaggatggcatacatggacctagaggagaagatggt
cctgagggtccaaaggggaaagcaggaccaggtggagaagctggacccattggtttagct
ggagagaagggaaaacttggggtccctggattgcctgggtaccctggaagacaaggtcca
aagggctcgaatggcttccctggattccctggagcaaatggtgataaaggagcaagagga
atcgctggcaaatcaggcccaagaggacaacgtggaccaacaggtccacgtgggggacgc
ggggcaagaggaccaacaggaaagccaggtgcaaagggcacctcaggtggcgatggacct
ccaggcccacctggagagcggggacctcaaggacctcagggacctgtcggcttacctgga
ccaaaaggacctaatggcccaccagggaaagacgggctgccaggtcaccctggacagagg
ggagaaacaggtttccaaggaaagactggacctccaggacctggaggggtggttggacct
caggggccaactggagagacaggaccaaatggagagcgaggacacccaggctcccctggt
ccacctggagagcagggtctgcctggggctgcaggaaaagagggaggaaagggggatcca
ggtccttcaggtcattctggaaaagtgggaccagctggactaaaaggtttccaaggatca
agaggtctcccaggagccatgggtcctggtggcctaaagggaggagaaggacctcagggt
ccccccggccccatcggttcccctggcgaaagaggccctgctggtcctggaggtcctatt
ggtcagacaggacgcaatggcccacaaggaccaccaggccctgctggagaaaagggggcc
cctggagagaaaggtcccatgggtccagctggccgtgatggcattcaaggtccggtaggt
cttcctggtccagctggtcctcagggccccccaggagaggacggtgataagggagacgtt
ggtggacctggacagaagggaagcaaaggagacaagggtgaacgaggtccaccaggctca
acaggtctccagggtgtgattggagctcctggtccagctggcagtgatggtgaggctggg
ccaagaggacagcagggcatgtttggccagaaaggagatgaaggacccagaggatttcca
gggctgccgggacccatcggactgcagggtttgcccggccctcctggtgagaagggagag
aatggagatgtcggaccaatgggtccaccaggtcctcccggtcccagaggtccacagggc
cccagtggatctgatggtgcacaaggtccccctggaggtattggttcaatgggaggtgtt
ggtgagaagggagaaactggtgaagccggtaacccgggaccacctggagagcctggtatt
caaggccttcgaggagagattggtgagaaaggagaaaccgggccacctggagctgctgga
ccccctggtggacgaggaccccccggagacgatggtcccaagggaaacccaggacctgtc
ggcttccccggagaccctggtccccctggtgagcctggtgctgggggtcttgatggttta
cctggtgataaaggtgatgatggagaggctggacaaccaggtcctccaggcccatctggt
gaagctggagtaccagggcctcctggcaaaaggggagctgttggacctgcaggtcaggaa
ggaagacaaggagaaaagggatctaagggagaagctggagcagagggacctgttgggaaa
actggacctgtgggacctcagggtcctcctggaaaacctggtgctgagggtctgcgtgga
attcctggccctgttggtgagcaaggactgccaggtgcatctggtcaagatggtcctcca
ggacctattggaccccctggacttcctggcatgaaaggtgactctggatccaaaggagaa
aagggtcatcctggtctgattggtttgatcgggcctcccggtgaacctggagagaaggga
gacagaggtctgcccgggcctcagggtgctgcaggtggcaaaggagaatctggcactggt
ggtgcacaaggtccactcgggcctcctggtcctcctggaatttctggtgcgcaaggacag
aaaggatctaagggatcacttggttcagctggtcaaaagggagaccctggactcttaggg
ccacctggaccacctggtccacctggtgatataatccagtcgctccccattcagcagcct
ggcaaaaaaagcaggcggcaggctgacttgcagggagatgaggctttagcagactatggc
atggaggggccaggcatggagggaatggatgatgtctttggatccctcaacaacctcaaa
caggatatcgagcgcatgaagtttcccatgggcacccaggacaaccctgctcggacctgc
aatgacctgcacctcagtcagcctgaaatcccggatggtgaatactggattgatccgaac
cagggctgcatcggagacgccatcaaagtgttctgtaacttcacagcaggtggagaaaca
tgcatttacccagacaagaaatcaacaggagtcagaatatccaactggcctaaggaatct
ccaggttcatggtttagtgaatttaagcgtggcaaaattctgaactatgtggatattggt
gacaacagccttaatgccgtgcagatgaccttcctgaagctgctgagttcctcagcacgg
cagaacttcacgtacatttgccatcagtctgtggcctggtacgacgccaaagccgacaac
tacgacagagcgctgcgcttcctgggctccaatgatgaggaactgtcttatgacaataat
cccttcatcaagtcgctgatggatggctgctcgatgaagcagggttattcaaggacagtg
ttggaaattaacacacctcgcatcgaccagttacccatcattgatgtaatgctgaatgac
tttgggcaatccaaccagaggtttggctttgaggtcggccccgtgtgtttccttggctag
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integrated database retrieval system
