Glycine max (soybean): 100795845
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Entry
100795845 CDS
T01710
Symbol
HDA12
Name
(RefSeq) histone deacetylase 9 isoform X3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03082
ATP-dependent chromatin remodeling
gmx03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100795845 (HDA12)
03083 Polycomb repressive complex
100795845 (HDA12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmx03036
]
100795845 (HDA12)
Enzymes [BR:
gmx01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100795845 (HDA12)
Chromosome and associated proteins [BR:
gmx03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
100795845 (HDA12)
HDAC complexes
Sin3A-HDAC complex
100795845 (HDA12)
BRAF-HDAC complex
100795845 (HDA12)
REST complex
100795845 (HDA12)
SHIP complex
100795845 (HDA12)
MiDAC complex
100795845 (HDA12)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
100795845 (HDA12)
Heterochromatin formation proteins
Other heterochromatin formation proteins
100795845 (HDA12)
Chromatin remodeling factors
NuRD complex
100795845 (HDA12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
100795845
NCBI-ProteinID:
XP_003538135
UniProt:
I1LKU7
LinkDB
All DBs
Position
11:complement(16084866..16091050)
Genome browser
AA seq
429 aa
AA seq
DB search
MPSKDKIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQHLFLKELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKT
IISKVLETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVSFVKRFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENDYIKYFAPEFSLKIPNGQIENLNSKSYLSTIK
MQVLENLRCIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERLDQHTQDKHIQRDDEYYDGD
NDNDQMDVS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgccttccaaggacaaaatcgcttacttctacgacggtgatgtcggtagtgtatacttt
ggggcgaagcatccaatgaagccccaccggctttgcatgactcatcatcttgttctctca
tacgatcttcataagaagatggagatttaccgtccacacaaggcttatcctgttgagctt
gcccagtttcattcagctgattatgttgagtttttgaacaggattacacctgacactcag
cacttgttcttgaaggaactgacaaaatataatcttggagaagactgccctgtatttgac
aacttatttgaattttgtcagatttatgctggtggaactatagatgctgcacgtcgatta
aacaatcaattgtgtgatattgctataaactgggccggtggactacatcatgctaagaaa
tgcgaggcatctggattttgttacatcaatgacttggttttaggaatcttggagcttctt
aaatatcatgctcgtgttttgtatattgatatagatgtgcaccatggtgatggtgtagaa
gaagccttctacttcactgacagggtgatgactgtcagttttcacaagtacggagatttg
ttcttcccaggtactggcgatgctaaggaaataggagaaagagaaggaaagttttatgcc
ataaatgtcccattgaaggatggaatagatgacagtagcttcactcgacttttcaagact
attatttccaaagtacttgaaacatatcaacctggtgcaatagttctccagtgtggagca
gactcgcttgctggcgatcgcttgggttgcttcaatctctctattgatggtcacgctgaa
tgtgttagcttcgtaaagagattcaatttgccattgctggtcactggaggtggggggtac
acaaaagaaaatgttgctcgatgttggactgttgaaacaggagttcttctagatacagag
cttccaaatgagattccggaaaatgattatattaaatattttgcaccagaattttctttg
aagattccaaatgggcagatagaaaatttgaatagtaaatcatatcttagcaccattaaa
atgcaagtcttggaaaatcttcgttgcatccaacatgctccaagtgtacagatgcaggag
gtccctccggacttctacattccagagttcgatgaagatgagcagaaccctgatgaacgc
cttgatcagcacactcaagacaagcacattcagcgcgatgatgaatactatgacggtgac
aatgacaatgatcaaatggatgtttcatga
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