Geomonas nitrogeniifigens: KP003_20505
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Entry
KP003_20505 CDS
T07937
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gnt
Geomonas nitrogeniifigens
Pathway
gnt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KP003_20505 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gnt03400
]
KP003_20505 (mfd)
Enzymes [BR:
gnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KP003_20505 (mfd)
DNA repair and recombination proteins [BR:
gnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KP003_20505 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
GAP1-M
ERCC3_RAD25_C
AAA_22
DUF4388
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QXE86698
LinkDB
All DBs
Position
complement(4628167..4631640)
Genome browser
AA seq
1157 aa
AA seq
DB search
MTMPEVQYLKQLNEKLTSPTCQVSVAGLEGSAPAYLLSRLADDGAPPMVVLTADQESADE
LARELRFFASRPEAVLPFPAWDVTPFEAASPHPDLVGERLNALVRLLDGGARAVVLPVAS
ALQRVIPRDTLGGVCQYLVTGEELERDGLVEKLVKLGYSHVPLVEDRGTFSVRGGILDIF
PPDREQPVRIEFFGDLVETIRLFDPVSQRSLEPLEELVLLPSREVILSEQVVKELAPRLK
RRCDHLGIGADRRRELLEQLQQAIYPPGVEFLQPLFHPQLETILDYAGEGAVRVLVDPAA
IADALQRFGEDLDSAAKRAELRDAIVCDPAELYLSAQDLERALSSGRRLEFPRLEIEGEG
GERLRFACSGNQDLKLDTNPEGERVLAPLTEKVVTWIAAGNRVLIPCHQAGQARRLYELL
SHYRLPLEHSQDSFRTAAARPPGRVEILIGEISRGFRLEQERLVVIAEEEIFGKRVKRRG
LSEARKQQLLTSLAELKPGDHMVHIDFGVALYRGLQHLSLTGMEGDFLLLEYAGGDKLYL
PVDRINLVQRYVGAEGIEPRLDRLGGAGWEKAKAKARAEIQEMAGELLKIHAAREIQEGY
RFSPADDMYRAFEASFAFEETPDQAAAIDQVVADMESQRPMDRLVCGDVGYGKTEVAMRA
AFKATLDGKQVAILVPTTVLAQQHAESFAARLKDYPVRVEMLSRFRTPQQQKQILEGVKK
GEVDIVIGTHRLLQKDVVFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPR
TLYMSLMGIRDLSIIDTPPVDRLAIKTFVSRSSDELIREAVLRELRRGGQVFFVHNRVQS
IGAMAEELRRIVPEAKIAVGHGQMAEKELEQVMLSFMHGEANLLLCTTIIESGLDIPTAN
TLIVNRADTFGLSQLYQLRGRVGRSKTRAYAYLLIPGEGSISSDARERLKIIQELTELGA
GFRIATHDLEIRGAGDLLGARQSGDIAAVGFELYTELLDEAVRTLKGEALPERVEPEIKL
KVPAFIPEDYVRDPNQRLLIYKKLTQPADEAEVDDIREELADRFGPLPVAALYLLEVMRL
RVALKRLLVKEIEYSGNELSLAFHERTPVSPDAITGLLRKEKGKYRFTPDFRLYVRVADC
SFDGVLAEARNVLKCLV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgcccgaagtgcagtacctgaaacagctcaacgagaaactgacctcccccacc
tgccaggtgagcgtggcggggctggaggggtcagcgcctgcctacctcctgtcgcggctc
gccgatgacggcgcgccgcccatggtggtgctgaccgccgaccaggagagcgcggacgag
ctcgcccgcgagcttcgcttcttcgcctcccgtccggaggccgtgctccccttccccgcc
tgggatgtcacccctttcgaggcggcatcgccccacccggacctggtcggcgagcggctg
aacgcgctcgtacgcctcttggacggcggggcgcgggcggtggtgctcccggttgccagc
gccctgcagcgggtcattccgcgcgacaccctgggcggggtctgccagtacctggtgacc
ggcgaggaactggagcgggacggcctggtcgaaaagctggtgaagctcggctattcccac
gtccccctggtcgaggaccgcggcaccttctcggtgcgcggcgggatcctggacatcttc
cctcccgaccgggagcagccggtgcgcatcgagttcttcggcgacctggtcgagaccata
cgcctcttcgatcccgtctcccagcgctccctggagccgctcgaggaactggtactgctc
ccctcgcgggaggtgatcctctccgagcaggtggtgaaggagctcgccccgaggctcaag
cggcgctgcgaccacctgggcatcggcgccgaccgccgccgagagctcctggagcagctc
cagcaggccatctatccccccggggtcgagttcctgcagcccctgttccacccgcagttg
gagaccatcctcgattacgcgggggagggcgccgtccgggtgctggtcgaccccgccgcc
atagccgatgcgctgcagcgcttcggggaggacctggacagcgctgcgaaacgcgccgag
ctgcgcgacgccatcgtctgcgaccccgccgagctctacctctctgcgcaggacctggag
cgcgccctctccagcggccgtcgcctggagttcccccgcctggagatcgagggggaaggg
ggcgaaaggctccggttcgcctgttccggcaaccaggacttgaaactcgataccaacccg
gaaggggagcgggtgctggccccgttgaccgagaaggtggtgacctggattgcggcgggg
aaccgcgtgctgatcccctgccaccaggccgggcaggccaggaggctctacgagctcctc
tcgcactaccgcctccccctggaacactcccaggattcgttccggaccgccgcggcccgc
ccccccggccgggtagagatcctgatcggcgagatatcccgcggcttccggctcgagcag
gagcgcctggtggtgatcgccgaggaggagatcttcggcaagagggtgaagcggcgcggc
ctctccgaggcaaggaagcagcagcttctcacctcgctggcggagttgaagccgggcgac
cacatggtgcacatcgacttcggcgtcgccctgtaccgggggctgcagcacctgagcctc
accgggatggagggggacttcctgctcctcgagtacgcagggggcgacaagctctaccta
ccggtggatcgcatcaacctggtgcagcgctacgtgggagccgaagggatcgagcccagg
ctggaccgcctgggcggcgccgggtgggaaaaggccaaggccaaggcccgcgccgagatc
caggagatggcgggggagttattgaagatccatgccgcccgcgagatccaggaagggtac
cgcttctcccccgccgacgacatgtaccgcgccttcgaggcctccttcgccttcgaggag
accccggaccaggcggccgccatcgaccaggtggtcgccgacatggagagccagcgcccc
atggaccgcctggtctgcggcgacgtcggctacggcaagaccgaggtggccatgcgcgcc
gccttcaaggcgaccctggacggcaagcaggtggccatcctggtgccgaccacggtcctg
gcccagcagcacgccgagagtttcgcggcgcggctcaaggactacccggtgcgggtggag
atgctgtcgcgctttcgcaccccgcagcagcagaaacagatccttgagggggtgaagaag
ggggaggtcgacatcgtgatcggcacccatcgcctcctgcaaaaggacgtggtcttcaag
gacctggggctgttgatcgtggacgaggagcagcgcttcggggtggcgcacaaggaaagg
ctcaagcagttccgtgccgtggtggacatcctcaccctcaccgcgacgccgatcccgcgc
acgctgtacatgtcgctcatggggatccgcgacctctccatcatcgacaccccgccggtg
gaccggctcgccatcaagaccttcgtctcccgctcctccgacgaactgatccgcgaggcc
gtcctgcgcgagctacgccgcggcggccaggtcttcttcgtgcacaaccgggtgcagtcg
atcggcgccatggccgaggagttacggcgcatcgtccccgaggccaagatcgccgtgggg
cacggacagatggcggagaaggaacttgagcaggtgatgctctccttcatgcacggcgag
gcgaacctccttctgtgcaccaccatcatcgaaagcggcctggacatccccaccgccaac
acgctcatcgtgaaccgcgccgacaccttcgggctctcccagctctaccagctgcgcggc
agggtcggccgttccaagacccgcgcctatgcctacctgctgattcccggggagggctcc
atctcctccgatgctcgggagcggctgaagatcatccaggagctgaccgaactaggggcc
ggcttcaggatcgccacccacgacctggagatccgcggtgccggcgatctcctgggggcg
cgccaaagcggcgacatcgcggcggtcggcttcgagctctacaccgagctcctggacgag
gcggtgcggaccctcaagggggaggcgctccccgagcgggtggaaccggagatcaagctc
aaggtaccggccttcatcccggaggattacgtccgggacccgaaccagcgcctgctcatc
tacaagaagctgacccagcccgccgacgaggcggaggtcgacgacatccgcgaagagctg
gcggaccgcttcgggccgctgccggtcgcggcgctctacctcctggaggtgatgcgcctg
cgcgtcgccctgaaacggctcctggtgaaggagatcgagtactccggcaacgagctctcg
ctcgccttccacgagaggacgccggtctcaccggacgccatcaccgggttgttgcggaaa
gagaaaggaaaatacaggtttacgccggacttccggctttacgtgcgggtcgccgactgc
tcgttcgacggggtgctggcggaggccagaaatgtcttgaaatgcctagtgtga
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