Geodermatophilus obscurus: Gobs_2120
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Entry
Gobs_2120 CDS
T01163
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gob
Geodermatophilus obscurus
Pathway
gob03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Gobs_2120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gob03400
]
Gobs_2120
Enzymes [BR:
gob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Gobs_2120
DNA repair and recombination proteins [BR:
gob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Gobs_2120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
LigD_N
Motif
Other DBs
NCBI-ProteinID:
ADB74805
UniProt:
D2SFQ0
LinkDB
All DBs
Position
2204759..2206069
Genome browser
AA seq
436 aa
AA seq
DB search
MPTRGSARRPTPPAGEPFVVTEHPSSGAELRLERNGVPCCWDLPEGPPAARGRALPAVPT
MGGDGGGLPTWDAGRYAVEQWTDDRVVVVLAGRRLRGRHVLFRSPDGGWSVRALDAPAEG
APLVPMLATAGELPPSAQDHDWGYEFKWDGVRALAVVEAGGLALWARSGTDITVRYPELS
LPTALTGHDAVVDGEVVALDARGRPDFGALQGRMHRTGPEVRRMAATTPVTYLVFDLLAW
EGESLLALPYAQRRERLEALGVAGERWVPTPWFRGGGAAVLAASRDNGLEGIVAKRLDSP
YRPGLRGPDWRKVKNVRTQAVVVGGWRPGQGRRAGGVGSLLVGVHDDAGRLVYAGHVGTG
FTAAALAELQPLFTPAHRPPFADALPREVTRDARWVAPELVGEVAFAAWTADGRMRHPSW
RGLRDDLAPEDVVEEW
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacccgggggagcgcccggcggcccaccccgccggccggggagccgttcgtcgtc
accgagcacccgtccagcggcgccgagctgcggctggagcggaacggcgtgccgtgctgc
tgggacctgccggaggggccacccgccgcgcggggccgggcgctgcccgccgtccccacc
atgggtggggacgggggcgggctgccgacctgggacgccggccgctacgccgtcgagcag
tggaccgacgaccgcgtcgtcgtggtcctcgccgggcggcggctgcggggccggcacgtc
ctcttccggtcgcccgacggcggctggtccgtccgcgcgctggacgccccggcggagggg
gcgcccctggtcccgatgctcgccaccgcgggggagctgccgccgtccgcgcaggaccac
gactggggctacgaattcaagtgggacggcgtccgggcgctggccgtcgtcgaggccggc
gggctcgcgctctgggcccgcagcggcaccgacatcaccgtccgttatcccgaactgagc
cttccgacagccctgaccggccacgacgccgtcgtcgacggggaagtggtcgccctcgac
gcgcgcggcaggccggacttcggcgcgcttcaggggcggatgcaccgcaccggccccgag
gtgcgccggatggccgcgaccaccccggtgacctacctggtgttcgacctgctcgcgtgg
gagggcgagagcctgctcgcgctgccgtacgcgcaacgccgcgagcggctggaggcgctg
ggcgtcgccggcgagcggtgggtgcccacgccctggttccgcggcggtggagccgcggtg
ctggccgccagccgcgacaacggactggaggggatcgtcgccaagcggctggactcgccg
taccgccccggcctccgggggccggactggcgcaaggtgaagaacgtccggacgcaggcg
gtcgtcgtcggcggctggcggcccgggcagggccggcgggcggggggagtggggtcgctg
ctcgtgggggtgcacgacgacgccggacggctggtctacgccgggcacgtcggcaccggc
ttcaccgccgcggccctcgcggagctccagccgctcttcacgccggcccaccgcccgccg
ttcgccgacgcactgccccgcgaggtcacccgcgacgcgcgctgggtggcgccggagctg
gtcggcgaggtggcgttcgccgcgtggaccgccgacggccggatgcgccacccgtcgtgg
cgagggctgcgcgacgacctggcgccggaggacgtggtcgaggagtggtga
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