Gordonia phthalatica: ACH46_19695
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Entry
ACH46_19695 CDS
T04097
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
goq
Gordonia phthalatica
Pathway
goq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
goq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACH46_19695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goq03400
]
ACH46_19695
Enzymes [BR:
goq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACH46_19695
DNA repair and recombination proteins [BR:
goq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACH46_19695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DAZAP2
RimP_N
Motif
Other DBs
NCBI-ProteinID:
ALG87066
UniProt:
A0A0N9MV16
LinkDB
All DBs
Position
4192577..4194529
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AA seq
650 aa
AA seq
DB search
MTRSQLEVDGRRIALSNLEKVLYPETGTRKFDVVDYCIRIADAMLPHLASRPVTRKRWPG
GTESAPFFEKTLPAGTPEWIARFTIEHSERKTGYPVVRSAADLVWLAQVAALELHVPQWR
IDLSDDIDRRTDRIVLDLDPGPDVSLDECARVAVDIRDLLDDAGLSSFPVTSGSKGIHVY
ARLSTLVKSESARAVAKQIATAMAQAAPRTVTATMAKAQREGRVFIDWSQNTAAKTTLAP
YSLRGQPRPYAAAPRTWDELAEPGLSQLEFTEVLDRYDEVGDLLAGLSGEVAAVAVDHAA
GGSDVIDLGEYRKKKSSRRASSKPTPAPPGPTERQPIPSGLTELRPMLATDDPIDGLDDD
WAYEGKWDGFRALVRVVGGRARLISRSGNDLTGDFPELSVIADCLVRDGKPVDAVLDGEI
VALNAAGISDFSLLVSRKRTSEPYELRLHLFDVLYLDGVDLTEQPWEVRREILDALTYFD
GESVIDIPPLLPGPAETAVAVARERGWEGVVAKRRAARYVSGRRSPDWRKQKNWNSVEVV
IGGYRPGRGSESKIGSLLVGVPAERGLRYLGRVGTGFTDAELDALLEELRPLRISMCPFV
DDIDKPVAGSATWVLPKLVADVAFMDWTSTGHLRHPTWRGIRRDKLPGDL
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgactcgttcacaactcgaggtcgacggtcgtcggatcgcgctctccaacctcgagaag
gtgctgtacccggagaccggcacccgcaagttcgacgtcgtcgactactgcatccgcatc
gccgacgcgatgctgccgcacttggcgtcgcggcccgtgacccgcaaacggtggccgggc
ggcaccgagtcggcacccttcttcgagaagaccctgcccgcggggacacccgagtggatc
gcgcggttcaccatcgagcactccgaacgcaagaccggctaccccgtggtccggtcggcg
gccgacctggtgtggctggcgcaggtcgcggccctggaactgcatgtcccgcagtggcgg
atcgacctgtcggacgacatcgaccgccgcaccgaccggatcgtgctggacctcgacccg
ggacccgacgtgagtctcgacgaatgcgcgcgcgtggccgtcgacatccgcgatctgctc
gacgacgcggggctgtcgtcgttcccggtcaccagcggcagcaaggggattcacgtgtac
gcgcggctctcgacgctggtgaagtccgagtcggcgcgggccgtcgcgaagcagatcgcg
actgcgatggcgcaggccgcaccgaggacggtgaccgcgacgatggcgaaggcgcagcgt
gaagggcgggtgttcatcgattggagtcagaacaccgcggccaagacgaccctcgcaccg
tactcgctgcgcgggcagccgagaccgtacgccgcggctccgcggacgtgggacgagctc
gccgaaccaggactgtcgcagcttgagttcaccgaggtgctggaccgctacgacgaggtc
ggcgatctcctcgcgggcttgtcgggcgaggtcgccgcagtcgcggtcgaccacgcggca
ggcggtagcgacgtcatcgatctcggcgagtaccgaaagaagaagtcgtcgcgccgggcg
tcgtcgaagccgacacccgcgccgcctggtcccaccgaacggcagcccattccctccgga
ctgacggaactgcggccgatgctggccaccgacgatccgatcgacggcctggacgacgac
tgggcctacgagggcaagtgggacggcttccgcgcgctggtccgggtggtgggtggtcgc
gcccggttgatctcgcggtcgggcaacgacctgaccggcgacttccccgagctctcggtg
atcgccgactgcctggtccgcgacgggaagccggtcgacgccgtgctcgacggcgagatc
gtcgcgctcaacgccgcgggcatctccgacttctcactcctcgtctcccgcaagcgcacg
tcggaaccgtacgagctccgcctgcacctgttcgacgtcctctatctcgacggcgtggac
ctgaccgagcagccgtgggaggtgcggcgcgagatcctcgacgcgctgacctacttcgac
ggcgagtccgtcatcgacatcccgcccctgctgcccggccccgccgaaaccgccgtcgcc
gtcgcccgggaacgtggatgggagggcgtcgtcgcgaaacggcgtgcggcccggtacgtc
agcggccgccgcagcccggactggcggaagcagaagaactggaacagcgtcgaagtggtg
atcggcggctatcgtcccggccgaggatcggagtcgaagatcggatcactgctggtgggg
gtgcccgccgaacgcggactgcggtacctgggccgagtcggcaccgggttcaccgatgcc
gaactcgacgccctgttggaggagttgcggccgctccggatcagcatgtgcccgttcgtg
gacgacatcgacaagcccgtcgcaggcagtgccacctgggtgctgccgaaactcgtcgcc
gacgtcgccttcatggactggacgtccaccgggcacctgcggcaccccacgtggcgcgga
atccggcgcgacaaactgccgggtgatctgtag
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