Gordonia sp. KTR9: KTR9_2737
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Entry
KTR9_2737 CDS
T02216
Name
(GenBank) Helicase subunit of the DNA excision repair complex
KO
K03702
excinuclease ABC subunit B
Organism
gor
Gordonia sp. KTR9
Pathway
gor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KTR9_2737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gor03400
]
KTR9_2737
DNA repair and recombination proteins [BR:
gor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KTR9_2737
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KTR9_2737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_22
AAA_16
UB2H
AAA_5
AAA_19
Helicase_RecD
AIG1
DUF87
AAA_30
DUF815
HEM4
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AFR49374
UniProt:
J9SHE8
LinkDB
All DBs
Position
complement(3162023..3164179)
Genome browser
AA seq
718 aa
AA seq
DB search
MAFAAERPVIAHSEFRPVGEIERTEARLEVVSEYEPAGDQPAAIKDLTRRINAGEKDIVL
LGATGTGKSATTAWLIEQVQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQ
PEAYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDR
SVEVEVGQEIDRDALLRLLVDVQYTRNDMSFTRGSFRVRGDTVEIIPSYEELAVRIEFFG
DEVESLYYLHPLTGDVVRQVDSLRIFPATHYVAGPERMEKAMASIERELEERLADLEGKG
KLLEAQRLRMRTTYDLEMMRQVGFCSGIENYSRHIDGRAAGSAPATLIDYFPDDFLLVID
ESHVTVPQIGGMYEGDMSRKRNLVEYGFRLPSAVDNRPLTWDEFVDRIGQTVYLSATPGP
YELGQSNGEFVEQVIRPTGLVDPQVVVKPTKGQIDDLVHEIRERTDRDERVLVTTLTKKM
AEDLTDYLLELGIRVRYLHSEVDTLRRVELLRQLRSGDYDVLVGINLLREGLDLPEVSLV
AILDADKEGFLRSTTSLIQTIGRAARNVSGEVHMYADKITDSMRNAIDETERRREKQIAY
NKANGIDPKPLRKKIADILDQVYREAEDETVAVGGSGRNSSRGRRAQGEVSKAGSSGVIE
KRDVSLMPRAELADLVSQLTDQMMSAARDLQFELAGRLRDEIADLKKEMRGMDAAGIK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgcagcagaacgccccgtcatcgcgcactcggagttccggccggtcggcgag
atcgaacggaccgaagcccggctggaggtcgtcagcgaatacgaacctgccggtgaccag
cccgccgccatcaaagatctgacccgccggatcaacgcgggtgagaaggacatcgtgctc
ctcggtgccaccggtaccggaaagtcggcaaccaccgcctggctgatcgagcaggtgcag
cgtcccaccctggtcatggctccgaacaagacgctcgcggcgcagttggcgaacgaactg
cgcgagatgttgcccaacaacgccgtcgagtacttcgtgtcgtactacgactactaccaa
cccgaggcctacatcgcgcagaccgacacctatatcgagaaggattcgtcgatcaacgac
gacgtcgagcgtctgcgtcactcggcgacgtcgagcctgctgtcccggcgcgacgtcgtg
gtggtcgcctcggtgtcctgtatctacggcctcggcacaccgcagtcgtacctcgaccga
tccgtcgaggtggaagtgggtcaggagatcgatcgcgatgcactgctgcggcttctcgtc
gacgtccagtacacgcgtaacgacatgtcgttcacccgcgggagtttccgtgtccgtggc
gacaccgtcgagatcatcccgtcgtacgaggaactcgccgtccgcatcgagttcttcggc
gacgaggtcgagtcgctgtactacctgcacccgctgaccggagacgtcgtgcgccaggtc
gactcactgcgcatcttcccggccacccactatgtcgccgggcccgaacgcatggagaag
gccatggcgagcatcgagcgcgaactcgaggaacggctcgccgatctggagggcaaaggc
aaactgctcgaagcccagcgtctacggatgcggaccacgtacgacctcgagatgatgcgc
caggtcggattctgctcgggcatcgagaactactctcggcacatcgacggacgcgccgcc
gggagcgccccggcgacgctgatcgactacttccccgacgatttccttctcgtcatcgac
gagtcgcacgtgaccgtgccccagatcggcggcatgtacgagggcgacatgtcgcgcaag
cgcaacctcgtggagtacggattccgcctaccgtcggccgtcgacaaccgcccgctgaca
tgggacgagttcgtggatcgcatcggacagaccgtgtacttgtccgccaccccggggccg
tatgagctgggccagtccaacggcgagttcgtcgagcaggtgatccgcccgacgggtctc
gtcgatccccaggtcgttgtcaaacccaccaagggccagatcgacgacctggtccacgag
atccgtgagcgaaccgaccgtgacgagcgcgtgctggtgacgaccctgaccaagaagatg
gccgaggacctcaccgactacctgctcgaactcggcatccgggtccgctatctccactcg
gaggtcgacaccctgcgccgcgtcgaactcctgcgtcagctccgatcgggtgactacgac
gtcctcgtcggcatcaacctgctgcgcgagggcctcgacctcccggaggtgtccctcgtc
gcgatcctcgacgccgacaaggagggttttctccggagcaccacctcgctcatccagacg
atcggtcgtgcggcccgcaacgtgtccggcgaagtccacatgtatgcggacaagatcacc
gactcgatgcgcaacgcgatcgacgagacggagcgacgtcgcgagaagcagatcgcgtac
aacaaggcgaacgggatcgaccccaagccgttgcgcaagaagatcgcagacatcctcgac
caggtctaccgggaggcggaagacgagaccgttgcggtcggcggttccggacggaactcc
agccgcggacgccgcgcccagggcgaggtctcgaaggccggcagctcgggggtcatcgag
aagcgcgacgtctcgctgatgccccgggccgaactcgccgacctcgtgtctcaactcacc
gaccagatgatgagcgctgctcgggacctgcagttcgaactcgccgggcgactccgcgac
gagatcgccgatctgaagaaagagatgcgcgggatggacgcggccgggatcaagtga
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