Geomonas paludis: M1B72_20830
Help
Entry
M1B72_20830 CDS
T08160
Name
(GenBank) caspase family protein
Organism
gpl
Geomonas paludis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Peptidase_C14
Ge1_WD40
eIF2A
PQQ_2
Cytochrom_D1
PROPPIN
TPR_16
WDR54
SGL
Iml2-TPR_39
Wzy_C_2
TPR_12
TPR_2
TPR_19
Motif
Other DBs
NCBI-ProteinID:
UPU35855
LinkDB
All DBs
Position
4885006..4890177
Genome browser
AA seq
1723 aa
AA seq
DB search
MRHAFLAVLMILTVVFPVWGEDRKVFDDPRLVQWSALMREGKRDELLRLVEADLRSPAPH
VMAPLVWVNVAGPPEKMAEIAKTRSDAALAKGLGHLPRIFYLSDQNLNHRMLTEFPARGA
EDGPDPVALEYLFWAARDSAQHEACFSYTIAMLKKAPDVFWFSWVAFNLCEYDERMRTRL
QQKLEHEKFLEGTAAARFLLHMLSKRPLDEDFMVQCAREWLERYPQDTFALRFLGIHLAG
RGDHQEALKAFEASYRSFPFYFRWLNHAESLVRLKKDQEAQQLLALSVAYNTEQPEAEAK
LRYYTVLKEINTEKAVQLLDQYGAMYPDHEGLLAARVDLEDSSKRYLDALELARDLVRRA
PKPQHQVRLLKALHYAHRDEEARKTYRALAATLEERSSEFYDSAREVLEREGNQADLEAL
WKRFAQEYPDSVLLAERRADALAAAGKLTEAEEQYRLLLKIAKPSDQQLRKYAAILRRSG
GLPAQLAEMERIVRLYSWSYRPQLLASSSAAPHQPPAAPAAPGNAPAHLVAQVGHGAGVT
ALSLSADGSFLASASEGSVLIWRVDNAQELRRLQQNGEVWSVAFAPDGTTLATGGNDGAI
RLWSLSGNLFRSFDHAAPITALAFTPDGTIVAGSSDGQVTLWDSAGKRLASLSEPSAAGV
TALALSPDGSLAATSSSNGPVRLWDLRNRKRLATLYGHLDASTALAFLPDGRFLATGGQD
GTVRLWHLASGADLGNVAMPDKVKCLTVLHGVKGMTLAVGTADGGMQIVDLEAMKLTATP
LRLGHEIRSLAQLGDGGELLVAPDDGTIRVVDPASGKERRSFQGTAATRPPFSFTPDGRY
LLSGGEFGAVHLWGLGAKYGEQVVRLTQKGPAFGRGTPDGRQVVVTGASGEIALWDLETQ
KLAASLPATAGSLSDAMVSPDGKTLATLYREGTARLWNLAGTLNATVKRVLDWGQPVAFL
DARRVAVGSEDSNLYLLDAASGLELSRLTGHSAGISAVAVSADGRLIASGSLDRSVLVWD
TATGKKLSQIGPHEGAVVALAFAPGSGLVASASPGSPIRLWDPATGAQKLSFGTDSLDSD
TLAFSPDGRFLLTGSTLSGIRLWDCATGRQIAHYPMREVPLLRQDCFHPSGEFAVIPGDQ
GVAQLVRTSTGTVLARLLSFADGSWAVLDSKGRYDASNGGEINGLHWVVGNETIDLSQLK
ERYYEPGLLSKVLGLNSDALRPVDALQQVRLSPQVRVTIPKDGSGLASISLKNRGGGIGK
VRILVNGKEVAADARGAKADPASPSIEIPLEIPEALLLPGEENSIQVVAWNEEGYLSSRG
TPVSFRPAKRPASAEVSLHAIVVGISQYAGPGMNLAFSGKDASDMADAIRVSSRRLFGVD
RVQVTLLTDYPQARDAALPTREAIAQAFKAAAKSLKAGDILVVYLSGHGVMAGSGDGADY
YYLAREARSTDLSDPSVRSQYGISSTELTEWIKQIPALKQVMVLDTCAAGGIVTKLVEKR
DLPSSQVRALDRLKDRTGFHVLMGAAADRVSLEASRYGQGLLTWSLLEGMRGAALREGEY
VDVQKLFQHAEDKVPELARSIGGIQKPIKASPAGNSFDFGRVLSEDKGRIPLASDRPMVL
RATFLSARPPVADTLRLSQSVNAELREQGAAARGSGIVYVDAEELPGAYFLSGSYQKNGG
AVTVQVYLTEGENQKASFTVSGSAESLPTLAREIVRRTEEVLK
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgagacatgcctttctcgcagtgctgatgatcctcaccgtggtgtttcccgtgtggggc
gaggaccgcaaggtcttcgacgacccccgcctggtacagtggtccgccctgatgcgtgag
gggaagcgggatgagcttttgcgcctggtcgaggcggacctgcgcagcccggcgccccac
gtcatggcccctttggtatgggtcaacgtcgcgggccctcccgaaaagatggccgaaatc
gcgaagacgcgcagtgacgcggcactggccaaggggctcggccacctgccgcgcattttt
tacctgagcgaccagaacctgaaccacaggatgctcaccgaatttccggcccggggcgcg
gaggatgggcccgacccggtggcgctcgagtacctgttctgggccgcgcgcgactccgcc
cagcacgaggcatgtttcagctacaccatcgccatgctcaagaaggcccccgacgtgttc
tggttctcctgggtcgctttcaacctgtgcgagtacgacgagaggatgaggacgcgcctg
cagcagaaactggagcacgagaagttcctggaggggactgccgctgcccgcttcctgctg
cacatgctgtccaagcgccccctcgacgaggatttcatggtgcaatgcgccagggagtgg
ctggagcgctacccccaggacacgtttgccctgcgtttcctgggcatacacctggccggg
cgcggcgatcaccaggaggccctgaaggccttcgaagcgtcctaccgctccttcccgttc
tatttccgctggttgaaccacgccgaatcgctcgtcaggctgaaaaaggaccaggaggcg
cagcagctcctggcgctgagcgtcgcctacaacaccgagcagccggaggccgaggcgaag
ctgcgctactataccgtgctcaaggaaatcaacaccgagaaggcggtccagctcctcgat
cagtacggggcgatgtatcccgaccacgaggggctgctggcggccagggtagacctggag
gactcgtccaagagatacctggacgccctggagctggcccgggacctggtgcgccgcgcc
cccaagccacagcaccaggtccgcctgctcaaggcgctgcactacgcccaccgcgacgag
gaggcccgcaagacctaccgcgccctggcggcgacgctcgaggagaggagctcggagttc
tacgactccgctcgcgaggtcctcgagcgggaggggaaccaggccgacctggaggcactg
tggaagcggttcgcgcaggagtaccccgattcggtcctgctggcggagcgccgggcggac
gcgctggctgcggcaggcaaactgacggaggccgaggagcagtaccggctccttctcaag
atcgcaaagccctcggaccagcagttgaggaagtacgcggcgatattgcgccgtagcggc
gggctgccggcgcaactcgctgaaatggagcggatcgtccggctatactcctggtcctac
cgcccccagcttctggcctcctcctccgcggcgccgcaccagccccccgcggcgcccgcc
gcacccgggaacgcccccgcgcacctggtggcgcaggtggggcacggggcgggggtgacc
gccctctccctctccgccgacggctccttcctggccagcgcctccgaggggagcgtcctc
atctggcgcgtggacaacgcccaggagctgcgccgcctgcagcaaaacggcgaggtctgg
agcgtcgccttcgcgccggacgggaccaccctggccaccggcggcaatgacggcgccatc
cggctctggagcctctcaggcaacctgttccgctctttcgaccacgccgcgccgatcacc
gccctcgccttcacgccggacgggaccatcgtggcggggagctcggacggccaggtcacc
ctgtgggactccgccggcaagcggctcgcttccctgtcggagccgtccgcggcaggggtg
accgccctcgcgctctcccccgacggcagcctcgcagcgaccagctcgagcaacggtccg
gtgcgcctctgggacctgcgcaaccgcaagcggctggccaccctctacggccacctcgac
gcctccaccgccctcgccttcctccccgacggccgcttcctggccaccgggggccaggac
ggcacggtccggctctggcacctcgcctcgggggccgaccttggcaacgtcgccatgccg
gacaaggtgaagtgcctcaccgtgctgcacggcgtcaaggggatgaccctcgccgtgggt
accgccgacggcggcatgcagatcgtggacctggaggcgatgaagctgacggccacgccg
ctgcggctcgggcacgagatccgctccctggcgcaactgggcgacgggggggagctgctg
gtcgcccctgacgacggcacgatccgggtggtcgatccggccagcggcaaggagcgccgc
tccttccaggggaccgcggccacccgcccccccttctccttcacccccgacggcaggtac
ctcctttccgggggggagttcggggcggtgcacctttgggggctgggcgccaagtacggg
gagcaggtggtgcggctgacgcagaaggggccggccttcggacgcggcacacctgacggc
aggcaggtggtggtgaccggggcctccggcgagatcgccctttgggaccttgagactcaa
aagctcgccgctagtctccccgccaccgccggcagcctctccgacgccatggtctctccc
gacggcaagaccctggcgacgctctaccgcgagggcaccgcgcggctttggaacctggcg
ggaaccctcaacgccacggtgaagcgggtcctcgactggggccagccggtagccttcctc
gatgcccgtcgggtggcggtcggctcggaggacagcaacctctacctcctggacgcagcc
tccggcctcgagctctcccgcctcaccggacacagcgccggcatcagcgccgtcgccgtt
tcggccgacggccgcctcatcgccagcggcagcctggacaggagcgtgctggtctgggat
accgcgaccggcaagaagttaagccagatcggcccgcacgagggcgccgtggtggcgctc
gccttcgcccccgggagcggcctggtcgccagcgcctcccccggcagcccgatccgcctc
tgggaccccgcaacgggcgcccagaagctgagctttggcaccgactccctggacagcgac
accctcgcattctccccggacggccgcttccttctgaccgggagcaccctgagcgggatc
agactctgggactgcgccaccggccgccagatcgcccactatccgatgcgcgaggtcccc
ctgctgcgccaggactgcttccacccgtccggcgagtttgccgtcatcccgggggaccag
ggagtggcgcagttggtgcggacctccaccggcacggtgctggcgcggcttctctccttc
gccgacggcagttgggcggtgctggactcgaaagggaggtacgacgcctccaacggcggg
gaaataaacggcctgcactgggtggtaggcaacgagaccatcgacctctcccagctcaag
gagcgctactacgagccggggctcctgagcaaggtgctcggcctgaacagcgacgcgctg
cgccctgtggacgcgctccagcaggtacgtctcagcccgcaggtgagggtgaccatcccg
aaggacgggagcggcctggcgagcatctcgctcaaaaaccgcggcggaggcatcggcaag
gtgcgcatcctggtcaacggcaaggaggtcgccgccgacgcgcgcggcgccaaggccgat
ccggcgagcccgtccatcgagatccccctcgagataccggaggccctcttgctgcccggg
gaggagaacagcatccaggtcgtggcctggaacgaggagggatacctctccagccgcggg
accccggtctcgttccgccccgccaaacgacccgcctcagcggaggtctccctgcacgcc
atcgtggtggggatctcgcagtacgccggcccggggatgaacctggccttctcgggcaag
gacgcctccgacatggcggacgcgatccgggtctcgagccgccggctcttcggcgtggac
cgggtccaggtcacgctcctgaccgactacccccaggcccgggacgcggcgctccctacc
cgcgaggcgatcgcgcaggctttcaaggcagcagccaagtcgctcaaggcgggggacatc
ctggtggtctacctctccggccacggcgtcatggcgggaagcggtgacggcgccgactac
tactacctggcccgggaggcgcggagcaccgacctctccgacccgtcggtccgctcccag
tacggcatctcctcgaccgagctcaccgaatggatcaagcagatccccgccctcaagcag
gtcatggtgctggacacctgcgcggcgggggggatcgtcaccaagctggtggagaagcgc
gacctccccagcagccaggtgcgcgccctggaccggctcaaggaccgcaccgggttccac
gtcctcatgggagccgccgccgaccgggtgagcctggaggcgagccgctacggccagggg
ctgctcacctggtcgcttttggaggggatgcggggcgccgctcttcgtgagggggagtac
gtggacgtgcagaagctcttccagcacgccgaggacaaggtcccggaactggcccggtcc
atcggggggatccagaagccgatcaaggcgtcccccgccggcaacagcttcgacttcggc
cgggtgctgagcgaggacaaggggaggatccccctggcaagcgaccgtcccatggtgctg
cgcgccaccttcctctcggcgcgccccccggtcgccgacaccctcaggctcagccagtcg
gtcaacgccgagctgcgcgagcagggcgcggccgcgcgtggctcgggcatcgtctacgtg
gacgcggaggagcttcccggcgcctatttcctttccgggagttaccagaaaaacggcggc
gccgtcacggtgcaggtatacctcacggagggggagaaccagaaggcctccttcaccgtg
agcggcagtgcggaatccctgcccacgctggcgcgggagatcgtccgcaggactgaggag
gtgctgaaatga
DBGET
integrated database retrieval system
