Gordonia polyisoprenivorans: GPOL_c05170
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Entry
GPOL_c05170 CDS
T01719
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gpo
Gordonia polyisoprenivorans
Pathway
gpo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GPOL_c05170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpo03400
]
GPOL_c05170
Enzymes [BR:
gpo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GPOL_c05170
DNA repair and recombination proteins [BR:
gpo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GPOL_c05170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
SfsA
Motif
Other DBs
NCBI-ProteinID:
AFA71586
UniProt:
H6MUZ9
LinkDB
All DBs
Position
complement(613489..615927)
Genome browser
AA seq
812 aa
AA seq
DB search
MASGQTLEVDGHTISVTNLAKVLYPSTGTRKFDVIDYYARIAEVMLPHLADRLVTRKRWP
NGVESTPFFEKSVPEGIPDWVTRRGVEHSSRIIEYVVADSPATLVWLAQMAALELHTPQW
RLPRDDALADFAAEGPKANRLVLDLDPGPGVTLAECGEVARDIHDMLDAAGLDSYPVTSG
GKGIHVYARFPTPVSADSARTVAKQIATSLAQQQPDRVTAIMAKSERPHKVFIDWSQNSA
SKTTLAPYSLRGREQPWVAAPRTWDEMADPDLTQLLYTEVLERIDEWGDLLDGLDDDGVP
AGPEESGDSAADAAQPESVSAEGGQVINLREYRRKRNAAVTPEPFGDTRFRDNEFTKSRS
GVDGARVSRENEPGGPIFVIQEHHARRLHYDFRLEHDGVLVSWAVPKNLPDDPDQNRLAV
QTEDHPMDYADFAGDIPAGEYGGGHVEIWDRGTYETEKWRDDEIIVRLHGERVQGRYALI
KTGDKNWLAHLMSDEPRPILPESLRDPRPMLATDESIEKLDSKDWAFEGKWDGYRLLVRY
IGGEFRLTSRSGLDMTADFTELACITDELGLIDVVLDGEVVALDATGRTNFTLLAGRRSA
DDDVTLKLYLFDLLYLNGTSLLRKPWSQRRELLEELAPAFRRSRYVEVPPLLPGPGAAAA
EYSREHGMEGVVAKRRSSTYQQGRRSNSWLKHKNWSDIEVVIGGWRPGRGNRAHTIGSLL
LGLPEETGLRYVGRVGTGFTESQLSALAEELEPLTIRRSPFLDKLDRPVAANAVWVLPKI
VGEVRFMDWTSTGHLRHPSWRGIRRDKLPGDL
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgggcagacactcgaggtggatgggcacaccatctcggtgaccaacctggcc
aaggtgctctacccgtcgaccggcacccgcaagttcgacgtcatcgactattacgcgcgg
atcgccgaggtgatgctcccgcatctggccgatcgtctcgtcacccgcaaacgctggccc
aatggcgtcgagtccaccccgttcttcgagaagtcggttcccgagggcatccccgactgg
gtgacccggcgcggagtcgaacacagcagtcggatcatcgaatacgtcgtggccgattca
cccgcaacactggtgtggctcgcacagatggcagcactcgagttgcatacgccgcaatgg
cgactgccgcgagacgacgcgctcgccgacttcgccgccgagggccccaaggccaaccga
ctcgtcctcgacctcgatccggggcccggggtcaccctcgccgagtgcggtgaggtcgcc
cgagacatccacgacatgctcgacgccgccggactggactcgtatccggtcaccagtggc
ggcaagggaattcacgtgtatgcgaggttcccgacgccggtgtcggcggattcggcgcga
acggtcgccaagcagatcgcgacctcgttggcccagcaacagcccgatcgggtcaccgcg
atcatggcgaaatccgaacggccccacaaggtgttcatcgactggagccagaacagcgcg
tccaagaccaccctcgctccgtattcgctgcggggccgcgaacagccctgggtggccgca
ccgcggacgtgggacgagatggccgatcccgatctgacgcagctgctctacaccgaggtc
ctcgagcggatcgatgagtggggcgatctcctcgacggactcgatgacgacggggtcccc
gccggcccggaggagtcgggtgattcggctgccgatgcggcacaaccggagtcggtctcc
gccgagggcggccaggtgatcaacctgcgcgagtaccggcgcaagcgcaacgccgcggtc
accccggagcccttcggtgacacaaggttcagggacaacgaattcacgaagtcacgatcc
ggggtggacggggcccgggtgtcgcgcgagaacgagccgggtgggccgatcttcgtgatc
caagaacatcacgcccggcgcctgcattacgacttccggctcgaacacgatggcgtgctg
gtgagttgggcagtaccgaagaacctgcccgacgatcccgaccagaaccgcctcgccgtg
cagaccgaggaccatccgatggattacgccgacttcgccggcgacatcccggccggtgag
tacggcggcgggcacgtcgagatctgggatcgcggtacctacgagaccgagaaatggcgt
gacgacgagatcatcgtccggctgcacggtgaacgcgtccagggccggtacgcgttgatc
aagaccggcgacaagaattggctcgcccacctgatgagcgacgaaccacgaccgatcctg
ccggagagtttgcgtgatccgcgcccgatgctggcaaccgatgaatccatcgagaagctc
gactcgaaggactgggccttcgagggcaagtgggacggttatcgcctcctggttcgttat
atcggcggcgaattccggctcacctcgcgctccggcctggacatgaccgccgactttacc
gaactcgcttgcatcaccgacgaactcgggctcatcgacgtcgtactggacggggaggtc
gtcgccctcgacgccaccggccgcaccaatttcacgctgctcgccggacgccgatcggcc
gacgacgacgtcaccctcaagctgtacctgttcgacctgctctacctcaacgggacgtcg
ctgctgcgcaaaccgtggtcgcagcggcgcgagctactcgaggagctcgccccggccttc
cggcgatcccgttacgtcgaggtaccgccactgctacccgggccgggcgccgcggccgcc
gagtacagccgtgaacatgggatggaaggcgttgtcgcaaaacgtcgttcgtcgacctat
cagcagggccggcgatcgaattcgtggctcaagcacaagaactggagcgacatcgaagtc
gtgatcggcggatggcggccgggccgtgggaaccgtgcgcacaccatcggctcgctgctg
ctcggcctgcccgaggagaccggattgcgctacgtggggcgggtcggcaccggcttcacc
gaatcccagctgagtgctctcgcagaagaactcgagccgctgaccatccggcggtcgccg
tttctggacaaactggaccggccggtcgcggcgaatgcggtgtgggtgctgccgaagatc
gtgggcgaggtgcgcttcatggactggacgagcaccggccatctacgacatccgagctgg
cggggaatccggcgcgacaaactccccggcgacctctga
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