Gossypium raimondii: 105763045
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Entry
105763045 CDS
T04129
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105763045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105763045
03019 Messenger RNA biogenesis [BR:
gra03019
]
105763045
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105763045
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105763045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
105763045
NCBI-ProteinID:
XP_012436534
UniProt:
A0A0D2PNT4
LinkDB
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Position
12:complement(6401008..6406756)
Genome browser
AA seq
700 aa
AA seq
DB search
MDDAEGGLSFDFEGGLDAGPPAPTASMPVVNSDPSAANNTNNFTAPGGVQASINDPVANQ
GGGAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKH
TNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLSAYNYNNKFYQQRN
AGFPQQTEKSQIPQAQNNVNQGAAGKPSATESTNVQQQQLQQQQQQIQQPQQQVSQTQIQ
NVPNGQSNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
AENVILVFSVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSF
HKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKREEEK
AKGVNSDNAENPDIVPFEDNEEEEEEESEEEDESFGAAAQGRGRGRGIMWPPHMPLARGA
RPMPGMRGFPPMMMGGDGFSYGPVTPDGFGMPDLFGAPRPFAPYGPRFSGDFTGPASGMM
FPGRPPQPGGMFPSGGIGMMMGPGRAPFMGGMGPTGANPARGGRPVGMPPMFPLPPAPAS
QNSGRAIKRDQRTPTNDRSSAGSEQGRGQEMGGPGGGLEDGTQYQQEGQKAHHEDQFAAG
NSFRNDDSESEDEAPRRSRHGEGKKKRRGLEGDVATASDH
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgcggagggaggtctcagcttcgatttcgagggcggtctcgatgccggtccc
cccgcccccactgcctccatgcctgttgtcaattccgatccttctgccgccaacaatacc
aacaattttaccgcccctggtggtgtccaggcttcgataaatgatcccgtcgcaaatcaa
ggtggtggagctggccgaaggagcttccgtcagaccgtgtgccggcattggctccgcagt
ctctgcatgaagggtgatgcctgtggtttccttcaccagtacgacaagtcccgcatgccc
gtctgccgttttttccggctttttggtgagtgccgggagcaagattgtgtgtacaaacac
accaacgaggatatcaaagagtgtaacatgtacaagctaggtttttgtcctaatggtcct
gactgccgatataggcatgcaaagctcccaggacctcctcctcctgtggaagaagtcctg
cagaagattcagcaattaagtgcttacaattataacaacaaattttatcaacagcggaat
gctggcttcccccaacaaactgaaaaatctcagattccacaagcacaaaacaatgtaaac
caaggagcagctggaaaaccttcagcaactgaatctactaacgtacagcagcagcagctg
cagcagcagcaacaacaaattcaacaaccgcaacaacaggtcagccagacccagatacaa
aatgtccccaatggtcagtctaaccaggcaaacagaactgctatacctttgcctcaagga
atatctaggtattttattgttaaaagttgcaaccgtgaaaatctggaactatctgttcaa
caaggagtatgggcaactcaaagaagcaatgaggctaaactgaatgaagcttttgattct
gctgaaaatgtgattttggtcttctccgttaaccgtacacggcatttccagggttgtgcc
aaaatgacatccaaaattggtggatctgttgctggaggcaactggaaatacgctcatgga
actgcacattatggacgtaatttctcggtaaaatggttaaagttatgtgagctgtctttc
cacaaaactcggcatttgaggaacccctacaatgagaacttaccagtaaagataagtaga
gattgccaggagttagagccttctgttggtgagcagttggcctccttgctttatcttgag
ccagatagtgagcttatggcaatttcactggcagcagaatcaaaaagagaagaagagaaa
gcaaagggagtcaattcagataatgcagagaaccctgacattgttccatttgaggacaat
gaagaagaggaagaggaagaaagtgaggaggaggatgaaagctttggtgctgcagctcag
ggcagaggaagaggcagaggaatcatgtggccccctcacatgccactagcccgtggtgcc
agacccatgcctggaatgcgaggttttccaccgatgatgatgggtggtgatggcttttct
tacggaccagttacacctgatggttttgggatgccagatctttttggtgctcctcgtcct
tttgcaccgtatggacccaggttttctggagattttacgggtcctgcatctggcatgatg
tttccagggcgacctccacagcctgggggaatgtttccatctggtggaatcgggatgatg
atgggtccagggcgtgcaccatttatggggggtatggggcccacaggtgctaatcctgct
cgaggtggccggcctgttggcatgcctccgatgtttcccctacctccagcacctgcctct
cagaactctggccgggctattaaaagagatcagaggacaccaaccaatgacagatctagt
gcaggatcagagcagggtagaggtcaggaaatgggtggtccagggggtgggttggaagat
gggacacagtatcagcaagaaggacaaaaggctcaccatgaagatcagtttgctgcagga
aacagcttcagaaatgatgacagtgaaagtgaggatgaggcacccaggaggtcaaggcat
ggggaagggaagaagaaacggagaggcttggaaggagatgttgccactgcttctgatcac
tag
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integrated database retrieval system
