Gossypium raimondii: 105764673
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Entry
105764673 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105764673
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
gra03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105764673
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
105764673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105764673
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
105764673
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
105764673
NCBI-ProteinID:
XP_012438795
UniProt:
A0A0D2RIF2
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Position
12:48581825..48600737
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AA seq
710 aa
AA seq
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MDEGKGVDQMDQLDQFHRNEAISAVADESFLGEEDDDYEDLYNDVNVGEGFLQSLRRNED
LGFRNEETKNSSNNNNGGKVGGSPMGAPESGVSIPGVAGVGEREDSRVSYESQGFRAGGG
DVKGPSAGFGGCGGGGLRVELAQGSNKLNEVAAEQSGNKSISLGSVGGMGHQGHGVGNVG
SVENEGLVRQGVGGPSVNGPGGSVGGGGSVGGGTMVGNGGGNVGVAGAGVGPGVGASGGA
GGGTILFVGDLHWWTTDAELESELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPAAATA
CKEGMNGHMFNGRPCVVAFASPFTVKKMGEAQLNRNQQMAQSSLSQGRRGPNDAGGKTGA
ANIQTGGNYQGGDNNRGYGRGNWGRGNTQGMGNRGPVGPMRNRAGGMGGRGIMGNGGNGF
GQGMGATPPLMHPQSMMGQGFDPAFGAPMGRMGGYGGFPGAPTPPFSGILPSFPPVGGVG
LPGVAPHVNPAFFGRGMPMNGMGMMPSSGVDGPNMGMWSDPSMGGWGGDEHGGGRAGESS
YGEEAASDHQYGEVSHERGGWQNPSKEKDRASEREWSGSSERRYRDDREPGYDRDIPREK
DMGHGHDWPERRHRDDRDIGRERDRERSRDRDRDRDRERDRDRDRDRYREDRDRYADHRR
YRDREPEHDDDWDRGRSSRTHSKSRLSQEDEHRSRSRDADYGKRPRLTSE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagggaagggagtggatcagatggatcagttggatcagtttcatagaaacgaa
gcaatatcagccgttgctgacgagagttttttaggtgaagaagacgatgattatgaagac
ctttacaatgatgttaatgttggtgaaggatttcttcaatctttaagaagaaacgaagat
ttagggtttagaaacgaggaaactaagaatagttcaaataataataacggtgggaaagtt
ggtggatcaccaatgggtgccccagaatctggtgtttcaattccaggggttgcaggtgtt
ggtgaaagagaggattctagggtttcttatgagagtcaagggtttagggctggtggtggt
gatgtcaaaggacctagtgcgggttttggtggttgtggtggaggtggccttagggttgaa
ttagcacaggggtcgaataaattgaatgaggtggctgcagagcaaagtgggaataagagt
attagtttaggtagtgtaggtggtatgggacatcagggacatggtgtagggaatgtaggg
agtgttgagaatgagggtttggtcagacaaggagtaggaggtccaagtgtgaatggccct
ggtggcagtgttggtggcggtggcagtgtgggtggcggtactatggttgggaatggtggt
ggaaatgtgggtgttgctggtgctggtgttggccctggagttggtgcaagtggtggtgca
ggtggtgggacaatattgtttgttggagatttgcattggtggacaacagatgctgaactg
gagtctgagttgtgcaagtatggacctgtgaaggaagtgaagtttttcgatgagaaagct
agtgggaagtcaaaagggtattgtcaggttgagttttatgatccagcagcagcaacagct
tgtaaggagggaatgaatgggcatatgtttaatggaaggccttgtgttgttgcctttgca
tcgccgtttacggttaagaaaatgggagaggctcagttaaataggaatcagcagatggca
cagtcttctctttcgcaaggaaggaggggccccaatgatgctggaggtaagactggtgct
gctaatattcaaactggtgggaattatcaaggtggggataataatagaggttatgggaga
gggaattgggggagaggaaatactcaggggatgggaaatagagggccagttggtcctatg
aggaatagggctggtggaatgggtggtagaggtatcatgggaaatggtggaaatggattt
gggcagggcatgggtgcaacacctcctctcatgcacccacagtcgatgatgggtcaaggt
ttcgatcctgcttttggtgcacccatgggaagaatgggcggttatggaggttttcctggt
gctccaacgccaccattttcagggattttaccttcatttcctcctgttggaggagttggt
ttgcctggagtggctcctcatgttaaccctgcattttttggaagaggtatgcctatgaat
ggtatggggatgatgccctcgagtggtgtagatggacctaatatgggaatgtggtcagat
cctagcatgggaggatggggtggtgatgagcatggtggtgggagagctggagagtcaagt
tatggggaggaagctgcatccgaccatcaatatggtgaggttagtcatgagagaggaggt
tggcaaaacccatctaaagaaaaagatagagcttctgaaagggagtggtctggttcatct
gaaagaaggtaccgtgatgatagggaaccaggatatgatagggacatacctagggagaag
gacatgggccatggtcatgattggccagaaagaaggcaccgagatgatagagacattggt
cgagaacgtgatagggagcgctctagagatcgtgaccgtgatcgtgatagggaacgtgat
cgagatagggatagggatcgatatagggaagacagagacagatatgcagatcatcgtagg
tacagggaccgtgagccagagcatgatgatgattgggataggggacggtcatcacggact
cacagcaagtcccggttgtcacaagaagatgagcatcgctcaagatctagagatgctgat
tatgggaagaggccacggcttacctcagagtga
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