Gossypium raimondii: 105779642
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Entry
105779642 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105779642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105779642
03009 Ribosome biogenesis [BR:
gra03009
]
105779642
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105779642
Spliceosome [BR:
gra03041
]
Complex A
U1 snRNP components
U1 related factors
105779642
Complex B
105779642
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
Pre-60S particles
Helicases
105779642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
105779642
NCBI-ProteinID:
XP_012458938
UniProt:
A0A0D2RYN5
LinkDB
All DBs
Position
4:complement(41684649..41689709)
Genome browser
AA seq
688 aa
AA seq
DB search
MAAAATASGGPRYAPPDPTLPEPWKGLVDGKTGYLYFWNPLTNVTQYERPRGIDSVPKSS
SVPMGSSVLVQQSSEGRYRYSSEKENDRRGRGCNAVSKLESILGGNQNSRGGPFHSLNAP
NGTSSCVIGGSFARGQGSAAGESNLFGDAYCRQHEITVSGGEVPPPFSSFESTGFPPEIL
REVHNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLLPGFMHLKRCHNDPQMG
PTVLVLSPTRELATQIQDEAHKFGKSSRISCTCLYGGAPKGPQLREIERGVDIVVATPGR
LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMFTATWPKEVR
KIAADLLVNPVQVNIGNIDELVANKSITQYVEVLSPMEKHRRLEQILRSQEPGSKIIVFC
STKKMCDQLARNLTRQFGAAAIHGDKSQADRDFVLSQFRTGRSPVLVATDVAARGLDIKD
IRVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDSKHASDLIKVLEGANQRVPA
ELRDMASRGGGRGMPRRWAPSSGGRDEGRGGRAGSGYGGREGGRGGRGISTSSSSWHERS
GGRGYDRESRDSRGFRDSYDKGRSRSRSPAGWGDRHKTGVRDRSWSRSAERYDSGAGRQR
SPTRSFLEVGMKRDRLSPSQQRGPLQNN
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctgcgactgcctctggtggtccacgatatgctccgcctgaccctactctt
cccgaaccatggaaaggcctggttgatggaaaaactggttatctctacttttggaatccg
ctaacaaatgtcacgcaatatgagaggcctagagggatagattctgtcccaaaatcttct
tcagtgcctatgggttcttcagttctggttcaacaatcttctgaagggcgttataggtat
agctctgagaaggaaaatgaccggcgtggaagaggctgcaatgctgtatcaaaacttgag
tcaatattagggggtaatcagaattcaagaggcggaccatttcattcccttaatgcacct
aatgggacttccagctgtgtgattgggggatcttttgctagaggacaaggatcagcagct
ggggaaagtaatttgtttggtgatgcttattgtcgtcagcatgagataacagtatctgga
ggtgaagtgccaccgcctttttcatcatttgaatctactggtttccctcctgagatactt
agagaggtgcacaatgctgggttttctgctccgactcccattcaggctcagtcatggcct
attgcactacaaggtagagacatagtggccattgcgaaaactggttctgggaaaacattg
ggttacctacttcctggatttatgcatctcaagcgttgccataacgatcctcaaatgggt
ccaactgtgttagttttatcaccaactagggagttggctacacagatacaagacgaggca
cacaaatttgggaagtcttcaagaattagttgcacgtgtttatatgggggggcaccaaag
ggtcctcagttgagagagattgagagaggagtggatattgtggttgccaccccaggccgg
ttaaatgatattctggagatgaagagaatcagcctccatcaagtttcttaccttgtgtta
gatgaggctgatcgcatgttagacatgggttttgaacctcaaatacggaagattgtgaaa
gaagtgcctacacggaggcagactctaatgttcacagcaacatggccaaaggaggtccgg
aaaattgcagcagatctactggtaaatcctgttcaggtcaatattggcaatattgatgaa
cttgtggcaaacaagtctattacccagtatgttgaagtattatcacctatggaaaagcac
agaagattggagcagatactgcgttcgcaagaaccaggatccaagattattgttttttgc
tcaactaagaagatgtgtgatcaacttgctcgtaacctcactcggcagtttggagctgct
gctatacatggagacaaatctcaggctgacagagacttcgtgctgagtcagtttcgcacc
gggaggtcaccagtgcttgttgcaaccgatgttgctgctcggggattagacattaaagac
ataagggtggtaatcaactatgacttccctactggagttgaagattatgttcacaggatt
gggaggacagggagggcaggtgcgaccggattggcatatacattctttggtgatcaggat
tcaaagcatgcgtcagatctcatcaaggttcttgaaggagcaaaccagcgggtgcctgca
gaacttcgtgatatggcttcacgtggtggtgggaggggaatgcctagacgttgggctccc
agttctggtggccgtgatgaggggcgtggtggacgtgctggttcaggatatggtggtagg
gaaggtggaagaggtggtcgaggaatttccacatcttcctctagctggcatgagagaagt
ggaggacgcggatatgatcgtgagtctcgcgacagtcgtggtttccgtgatagttatgac
aagggaagaagtcgcagtcgaagtcctgcaggttggggtgatcgccataaaactggtgtc
cgtgaccgcagctggagtcgtagtgctgaaaggtatgatagtggtgctggacgtcaacgt
tccccaacgcgcagttttcttgaggtggggatgaaacgggaccggttgtctccatcccaa
cagcgtgggccacttcaaaataattag
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