Gossypium raimondii: 105788995 Help Entry 105788995         CDS       T04129                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism gra  Gossypium raimondii Pathway gra03030   DNA replication gra03410   Base excision repair gra03420   Nucleotide excision repair gra03430   Mismatch repair Brite KEGG Orthology (KO) [BR:gra00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     105788995    03410 Base excision repair     105788995    03420 Nucleotide excision repair     105788995    03430 Mismatch repair     105788995  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:gra03032]     105788995    03400 DNA repair and recombination proteins [BR:gra03400]     105788995 Enzymes [BR:gra01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      105788995     6.5.1.6  DNA ligase (ATP or NAD+)      105788995     6.5.1.7  DNA ligase (ATP, ADP or GTP)      105788995 DNA replication proteins [BR:gra03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     105788995  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      105788995 DNA repair and recombination proteins [BR:gra03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      105788995    NER (nucleotide excision repair)     Other NER factors      105788995    MMR (mismatch excision repair)     Other MMR factors      105788995 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  105788995 NCBI-ProteinID:  XP_012471616 UniProt:  A0A0D2RMQ3 LinkDB All DBs Position 2:complement(43876916..43886874) Genome browser AA seq 799 aa AA seqDB search MLTFRQSHLFRCTFCITRPLTPLLPPSSSHFLPSNSPFFRPKPLSLSSLNPHSNMSTRPS AFDALMSNARRLAGKKSSSSSSPTKKRKSLDSSPTENPNPLKTVGSAEVKHDPEVSSDGI GKPINDSPKPNLDEAKKPPDSKKVKVGSASERNVEMKGKIRLLKKKPADFDPNMVACWEK GERVPFLFLSLAFDLISNETGRIVITDIVCNMLRTVIATTPDDLVATVYLAANKVAPAHE GLELGIGDASIIKALAEACGRTESQVKSQYKDKGDLGLVAQASRSSQSMMRKPDPLTVIK VFDTFRLIAKESGKDSQEKKKNRIKSLLVAATDCEPQYLIRLLQTKLRIGFSEQTLLAAL GQAAVYNEQHSKPPPNVQSPLEEAAKIVKQVFSILPVYDKIVPALLTGGVWDLPKSCGFT PGVPVGPMLAKPTKGVAEIINKFQDIDFICEYKYDGERAQIHYMENGSVEIYSRNAECNT GKFPDVVAAISRFKKSSVKSFVLDCELVAYDRVQKKILPFQILITRARKNVVVSEIKVDV CIFAFDILYLNGQPLLHEQLKVRKERLYDSFEEEPGFFQFATALTSNDLEEIQTFLNSAV SSSCEGLIIKTLDRDATYEPSKRSLNWLKLKKDYMESIGDTLDLVPIAAFHGRGKRTGFY GAFLLACYDENNEEFQSICKIGTGFSEAELEERSASLRSKVIPEPKSYYRCSEMMKPDVW FETTEVWEVKAADLTISPVHRAAIGIVDPDKGISLRFPRLVRVREDKTPEQASSSEQVAE MYNAQKHNQTNNEDDGEDD NT seq 2400 nt NT seq  +upstreamnt  +downstreamnt atgctaacgtttcgccaatcccatcttttccgctgtactttttgtattactcgtcctctc acccctctccttcctccctcttcctcccatttccttccttccaactcgcctttctttcgc cccaaacccctctctctttcttccttaaaccctcactccaacatgtccactcgcccctcc gccttcgatgctttaatgtctaatgctcgccgtttagccggtaagaagagctcttcctct tcttcgcccaccaagaaacgcaaatccctcgattcgtcgcccaccgaaaaccctaacccc ctcaaaaccgtcggctccgctgaagtcaagcacgacccagaggtttctagtgatggaatc ggaaagcccattaacgattccccaaaacccaatttagatgaggcgaagaaacccccggat tcgaagaaggtgaaggtggggagcgcctccgagagaaacgtggagatgaaagggaaaatt cggttgttgaagaagaagccggcggattttgatcccaatatggtggcgtgttgggagaaa ggagagagggtgccgtttttgtttctgagcctggcgtttgatttgatatccaatgagacg ggtcggattgtgataacggatatagtttgcaatatgttgaggactgttattgctaccacg ccggatgatttggtggcgacggtttacttggcagcaaataaggttgctccggcgcatgag gggttagagctgggaatcggtgatgcatccattatcaaggccctagctgaggcctgtggg aggactgaatcacaggttaagagtcagtacaaggataaaggagacctgggccttgttgct caggctagccgttcatctcaatcaatgatgcgcaagcctgatccattgactgttatcaaa gtgtttgacacgtttcggctaattgctaaggaatctggaaaggatagtcaggagaagaaa aagaatcgtatcaaatcacttcttgttgctgcaactgactgtgaacctcagtatttgatt cgtctgcttcagacaaagctgcggattggattttcagagcagactctgttagctgcatta ggacaggctgctgtatataatgaacaacattctaaaccacctccaaatgttcagtctcct ttagaggaggctgctaagattgtcaaacaagttttttctatccttccagtctatgataaa atagtcccagcactcttgactggtggtgtatgggatctgcctaagagttgtggctttacg ccgggtgttcctgttggacctatgctagcaaaaccaaccaaaggtgttgctgaaatcata aataaattccaggacattgacttcatatgtgaatataaatatgatggagagcgtgcgcag atacactatatggagaatggttcagttgagatatacagtcgaaatgctgagtgtaacact ggaaagtttcctgatgttgttgctgcaatttctagatttaagaagtcctctgtaaaatca tttgttttggattgtgagcttgttgcttatgatcgtgttcaaaagaaaatattacccttt cagatccttattacaagagcacggaaaaatgtggtagtgagtgaaatcaaagttgatgtg tgcatattcgcttttgacatcttataccttaacgggcaaccacttcttcatgagcaactt aaagttcgtaaggagaggctttatgattcatttgaggaagaacctgggttttttcaattt gcaacagccttaacatcaaatgatcttgaggagattcaaacattccttaattctgctgtt tcttcaagttgtgagggtttaattatcaaaacattggatagagatgctacatatgagcca tcgaagcggtcactcaactggctaaaattgaagaaagactacatggaaagtattggcgac acattagatctagtacctattgctgctttccatggccgtgggaaacgaactggcttctat ggtgcttttctcttggcatgttatgatgaaaataatgaagaattccagagtatctgtaaa ataggtactggattttctgaagcagagcttgaggaacgttctgccagtctccgctctaaa gtgattcctgaaccaaagtcgtactatcgttgttctgagatgatgaagccggatgtatgg tttgagactacagaggtttgggaggtaaaagctgcagacttgaccattagccctgttcat cgtgctgctattgggattgtggatcctgataagggcatatctctccgatttccacgttta gttcgtgttcgagaagataagacaccagagcaagcttcatcatctgagcaggttgctgag atgtataatgctcaaaaacacaatcaaaccaataacgaagacgatggcgaggatgattga

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