Gossypium raimondii: 105794528
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Entry
105794528 CDS
T04129
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105794528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105794528
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105794528
Spliceosome [BR:
gra03041
]
Complex C
Other components
Step II factors
105794528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_30
ABC_tran
AAA_19
AAA_16
nSTAND3
SLFN-g3_helicase
Sigma54_activ_2
T2SSE
AAA_14
ATPase_2
Helicase_RecD
AAA_29
AAA_23
FtsK_SpoIIIE
Sigma54_activat
SRP54
DAP3
G-alpha
Flavi_DEAD
AAA_24
AAA_33
Motif
Other DBs
NCBI-GeneID:
105794528
NCBI-ProteinID:
XP_012479186
UniProt:
A0A0D2RMZ3
LinkDB
All DBs
Position
3:48714648..48722553
Genome browser
AA seq
700 aa
AA seq
DB search
MANLPIVQFEKKIEETVDQNPVVVIIGETGSGKSTQLSQMLHRKGYTNSGIVAVTQPRRV
AAVSVSRRVAQELGVRLGEEVGYAIRFEDRTSERTQIKYLTDGVLLRESLSNPELNQYSV
IILDEAHERSLNTDILLGLMKRLVKRRASNLKVLITSATLDGEKVSKFFSDCPLLTVPGK
LFPVEIFYSKERPTSYLESSLKTAMDIHVREPEGDILIFMTGQDDIEKLVSKLEDKVRSL
EEGSCMDAIILPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPATGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRVYNDDFLDVTVPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSTESLEDALKQLYLIDAIDENGSITSIG
RTMAELPLEPSLSRTLIEANEYGCLSQALTVAAMLSAETNLLPGRSKNNEKKRKYPPLEL
PDGSGFGDHIQLLQIYECWDENNYDIGWCKDYDLQVRGMMFVKEVRKQLSQIMQKIAKGS
SDVQVNQSQKRRQSYRNLRKALSIGFASQLAERMRHHNGFRTLGFKPQLVQVHPSSVLKP
DDDGLYPNYVVYHELIATSRPYMRNVCAVERQWVIPILEKLDKLDVRKLSGGGLGHVEEI
TEGNTSDLLKKEAVIVTAPEEQESKIQAARERFLARKGKK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcttccaatcgtgcaattcgagaagaagatagaagaaacagtggaccaaaat
ccagtggtggtgatcataggagagaccggttcgggaaagagcacgcagctctctcagatg
ctccaccgcaaaggatacacaaattccggaatcgttgccgtcactcagccccgtcgcgtc
gcagccgtatctgtttccaggcgagttgcgcaggagcttggtgttcggcttggggaagaa
gtaggctatgctattcggtttgaagatagaacttccgaaagaacacaaatcaaatacctt
actgatggagtgcttcttcgagaaagtctgtcaaatccggaactgaatcagtattctgtt
attattctggacgaggctcatgagaggagtttgaatacggatattttgctggggttgatg
aaacgcttggttaaaagacgtgcatccaatttaaaagttctgatcacatcggcaaccctt
gatggtgaaaaagtgtcgaagttcttttcagattgtcccttgttgactgtccctggaaaa
ttatttcctgtggaaatattctacagcaaggagcgacctacaagctatcttgagtcttca
ctaaaaacagctatggatatacatgttcgggaaccagaaggtgacatcttaatattcatg
actggacaggatgatatagagaagttggtatcaaagctggaagataaagttcgaagtcta
gaggaaggctcctgcatggatgctatcattcttcctctccatggttcattgccacctgaa
atgcaggtgcgtgtattcagtcctccccctccaaactgtaggcgttttattgttgccaca
aacatagctgaaacttctttgacagttgatggtgttgtgtatgttattgattctggttat
gtgaagcaacggcaatataacccagcaactggaatgtattcccttgatgttgttcaaatt
agcaaggtacaagctaatcaacgtgctggacgagctggaagaacacgtcctgggaagtgt
taccgtttatacccatccagggtttacaatgatgatttccttgatgtaacagttcctgaa
atacagcgatcttctcttgctggcagtgttctttatctaaagtcattggacctccctgat
attgatattctgaagtttgattttcttgaccccccttctaccgagtcattagaagatgct
ctaaagcaactatatctgattgatgccattgatgaaaatggatcgataactagtattggg
cgaacaatggccgagctcccattggaaccttcactttcgagaaccttaattgaggcaaat
gaatatggttgcttatcccaggctctgactgttgcggccatgttatcagccgaaacaaat
ttgcttcctggtcgaagcaagaataatgagaagaaaagaaaataccctcctttggaactt
cctgatggttctggttttggtgatcacatccagttgttacagatctatgaatgctgggat
gaaaataattacgatattggttggtgcaaagattatgacttacaggtgcgaggaatgatg
tttgtcaaagaagttcgaaagcagctatcgcagataatgcagaagatagcaaaagggtcc
tcagatgtacaagtaaatcaaagtcagaaaagacgccagagttataggaatttgaggaaa
gcattgtccattggctttgcaagtcagcttgctgagcggatgaggcatcataatggcttt
cgaacactgggttttaagccccaactagtgcaggtgcatccttcctctgtgctaaagcca
gatgatgatggattatatccaaattatgttgtctaccacgaacttattgctacctcacgc
ccatatatgcggaatgtgtgtgctgtagagcgtcaatgggtgattccaattttagagaaa
cttgacaaacttgatgtcaggaaattaagtggtggtggattgggtcatgtagaagagata
actgagggaaacacgtcagacttactgaagaaggaagctgtcatcgttacagctccagaa
gagcaggaaagtaaaattcaggcagcaagggaacgttttcttgctcgcaagggaaagaaa
tga
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