Gossypium raimondii: 105802677
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Entry
105802677 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105802677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105802677
03036 Chromosome and associated proteins [BR:
gra03036
]
105802677
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105802677
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105802677
mRNA degradation factors
5'-3' decay
Decapping complex
105802677
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105802677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
105802677
NCBI-ProteinID:
XP_012489916
UniProt:
A0A0D2SH75
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Position
11:complement(55983818..55989641)
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AA seq
494 aa
AA seq
DB search
MNSRGRYPPGIGVGRGGGVNANPNFQSRPSQQHYVQRNLLQNHHHFQQQHQQQQQQHQQQ
LWLRRDQLPGGNDSSVVDEVEKTVQSEAVDSSSQDWKARLNVPPPDTRYKTEDVTATKGN
EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE
KIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVH
LLVGTPGRILDLAKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIHFLPANRQILMFS
ATFPVTVKDFKDRYLKKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQS
IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG
IDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI
KQIPPHIDQAIYCR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtagagggaggtatccaccgggaatcggtgttggccgagggggcggagtgaac
gcgaaccctaactttcagtcgaggccttcgcaacaacactacgtgcagaggaatttgttg
cagaatcaccatcactttcaacaacaacaccagcagcaacaacaacagcatcagcaacag
ctgtggctcagacgagaccagttgcccggcggcaatgactccagtgtggtcgatgaggtc
gagaagaccgtacaatctgaagccgtcgactctagttcgcaagattggaaggcaaggctg
aacgtaccgccacctgatacacgctacaaaacagaggacgtgacagctaccaaaggaaat
gaatttgaggactattttctgaaacgtgaacttcttatgggaatatatgagaagggtttt
gaaagaccatcccctattcaggaagagagtattcctattgctttaaccggaagtgatatt
cttgctagagccaaaaatggcactgggaagacagcagcattttgtattcctgccttggaa
aaaattgaccaagataacaatgttattcaagttgtcatacttgttccaacacgagaactg
gctcttcagacatcacaagtgtgcaaggagctcgggaagcatttacaaattcaagtcatg
gtcacaactggaggtaccagtctcaaggatgatatcatgcgactgtatcaaccagttcat
ttgctggttggaactcctggcagaattcttgaccttgctaaaaagggtgtttgcattttg
aaagattgttcaatgcttattatggacgaggcagataaacttctgtctccagagtttcaa
ccttctatagagcagttgatacattttcttccagcaaatcgtcaaattttgatgttttca
gccacatttcctgttactgttaaggacttcaaagacagatacctaaaaaaaccttatatt
attaatctaatggatgagcttactctgaagggtattacacaatattatgcttttgtggaa
gaaagacagaaagtccattgcctgaatacccttttctctaagctgcaaataaaccaatca
atcattttctgcaactcggtcaatcgggtggagctgttggccaagaaaattacggaactt
ggctattcttgcttttatattcacgcaaaaatgcttcaagaccatcgtaacagagtattt
catgatttccgcaacggtgcatgcaggaaccttgtttgtactgatctttttacaaggggt
atagatatccaagctgtgaatgttgttattaacttcgacttccccaagaactcagaaaca
taccttcatagagttggtcgatcaggaaggtttggtcatcttggattggctgtgaatttg
atcacttacgaggaccgctttaacttgtataggattgaacaagaacttgggactgaaatt
aagcaaattcctccacacatcgatcaggcaatttactgccgatga
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