Christiangramia salexigens: LPB144_07705
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Entry
LPB144_07705 CDS
T04586
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
grl
Christiangramia salexigens
Pathway
grl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
grl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LPB144_07705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grl03400
]
LPB144_07705
Enzymes [BR:
grl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LPB144_07705
DNA repair and recombination proteins [BR:
grl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LPB144_07705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APG60299
UniProt:
A0A1L3J570
LinkDB
All DBs
Position
complement(1715007..1717415)
Genome browser
AA seq
802 aa
AA seq
DB search
MSLEDYEKKRDFSKTPEPPSEVNQDAKSRFVIQRHQASRLHYDLRLEIEGVLASWAVPKG
PSMNSKDKRLAIRTEDHPVKYLHFKGSIPKGNYGAGEMSIWDSGVYKSAIDSKSIIEQLN
EGNLKLIFKGEKIKGEFALVKTNSEKGDQWLLIKKGDSYSTDLNYDAEDYIPRSTSKKAK
FRELKNRKTIAPMLATSTAEIFNDPKWIYELKWDGYRIISHIKDTKVHIQSRNGITYNSK
FPALVKDLENIPHDAVLDGELVLLDKNGKSVFQELQNYDGSTKLHLKYYVFDMLFLNGHS
MIDLPLLERKSLIPEVLEDTAVAVYCDHIEGMGTAFYNKAVEAGMEGVIAKKADSVYRPG
IRSEDWLKIKKEESQEAIICGYTTSEKTAFGSLILGIEEDNTLKYIGNCGTGFGRGGKKA
LLQKMKKLQVKTSPFEEKIDLKGREPKWIEPKLVCEVIFSEWTKEGKMRHPVFKAVRKDK
EPEEARLQPSVDKAAEASAGAEDRLEINGRQVSVTNLSKVYWPDSGLRKFDLIDYYLKIS
EIILPYLKDRPQNLHRHPNGINKKGFYQKDTKGFNENWLETTRVYSESSQKDIEYLLCQD
EASLIYMANLGCIELNPWNSRIGNLEKPDYAVIDLDPSSKNNFEEVIEVAQVTYELLKAA
EIGAYCKTSGSTGIHIYIPMGGEYTYNEVRDFTKIICYLIQDALPDLTSMERVVKNRKGK
IYLDYLQNRKGQTLAAPYCVRPKKGAPVSAPIEWKELKSGLRITDFNMNNMPQRLEKKGD
LFHAVLTSEFEMYDAIDRLNSL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttgaagattatgaaaagaaacgtgatttttcaaaaacacctgaacctccctct
gaggtaaatcaggatgcaaaatcacgttttgttattcaaagacatcaggcgagtagattg
cattacgatcttagattagagatagagggcgtgcttgccagttgggccgttcccaaaggg
ccttcaatgaattcaaaagataaaaggcttgcaattcgcacagaagatcatccggtgaaa
tatttgcattttaaaggaagtattccaaaaggtaattatggtgctggtgaaatgagcatt
tgggattctggtgtttataagtctgcgatagattcaaaaagtattatagaacaactaaat
gaaggcaatttaaagctcatttttaaaggtgagaagataaagggtgaattcgcgctggtt
aaaaccaattctgaaaagggcgatcaatggttactcattaagaaaggcgattcatattct
accgatcttaattatgatgcggaagattacattccacgatctacgagtaaaaaggccaaa
tttagagagctaaaaaacagaaagactatagcgcctatgcttgccacatctacggccgag
atatttaatgatcctaaatggatctatgagcttaagtgggatggctacaggattatttct
catataaaagacactaaagttcatattcagtccagaaatggaattacctataattcaaaa
tttccggcattggtcaaggaccttgaaaatatccctcacgatgcggtactggatggcgaa
cttgttttgctggataaaaacggcaaatcggtttttcaggaattgcagaattatgatgga
tccacaaaactgcatttaaaatactacgtctttgatatgctattccttaacgggcatagt
atgatagacctgcctttgttggagagaaagagtcttattccggaagtacttgaagatacc
gcagtagcggtttattgcgatcatattgaagggatgggaactgcattttataataaggcg
gtagaagccgggatggaaggcgtaatcgcaaaaaaagcagattcggtttaccggcctggg
attagaagtgaggactggctgaaaattaaaaaagaagaaagtcaggaagctattatttgc
gggtacacaacttcagaaaaaacagccttcggttctttaatattggggatagaagaggat
aatacattaaaatatataggtaattgcgggacaggatttggtaggggaggaaaaaaagcc
ttgcttcaaaagatgaaaaagcttcaggttaaaacttccccatttgaagaaaaaatcgat
ctaaagggaagagagcctaaatggatagaacctaaattggtttgtgaggtgatcttttct
gagtggaccaaagaaggtaaaatgaggcatcctgtatttaaggctgttagaaaggataaa
gaaccggaagaagctaggcttcagcccagtgtggataaagccgctgaagcttctgcgggt
gcagaggaccggcttgaaattaatggcagacaggtaagcgtaaccaatttaagtaaagta
tattggccggattccggattaaggaaatttgatctgatagattattatttaaaaatttca
gaaataatactcccttatttaaaggacaggcctcagaatttacacagacatccgaacggc
ataaataagaagggtttttatcaaaaggacactaaaggatttaatgaaaactggcttgag
accaccagagtttattcggaatcttcccaaaaagatatagaatatttgttgtgtcaggat
gaagccagccttatatatatggcaaacctaggctgtatagaattaaacccatggaactcc
agaatcggaaatttagaaaagcctgattatgctgttatagatcttgatccatcttctaag
aataattttgaagaggtaattgaagttgctcaggtaacctatgagctgcttaaggccgcg
gaaataggtgcctattgtaaaaccagtggttctaccggaatacatatctatattcctatg
ggaggggagtatacttataatgaggtacgtgatttcacaaagatcatttgttacctaatt
caagatgctctacctgatttgacgagtatggaaagagttgtaaaaaacagaaaggggaag
atctatcttgattatctccagaaccggaaaggtcaaaccctggccgctccatattgtgtt
cgtcctaaaaagggagcacctgtttctgcccctatagagtggaaagaattaaaatctggt
ttgaggatcacagacttcaatatgaataatatgcctcaaagacttgaaaaaaaaggtgac
ctttttcatgctgtcttaacttcagaatttgagatgtatgatgcaatagatcgcctgaat
tctttatag
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