Geotrypetes seraphini (Gaboon caecilian): 117350201
Help
Entry
117350201 CDS
T09159
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03020
RNA polymerase
gsh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117350201 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
117350201 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117350201 (POLR2A)
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117350201 (POLR2A)
Enzymes [BR:
gsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117350201 (POLR2A)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117350201 (POLR2A)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117350201 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
117350201
NCBI-ProteinID:
XP_033780198
UniProt:
A0A6P8PZG8
LinkDB
All DBs
Position
16:35137476..35191811
Genome browser
AA seq
1996 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSN
NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQTEGDEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMEPKY
ARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADVVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIVRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINC
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVE
FQNLATLKPSNKAFEKKFKFDYTNERALRRTMQEDLVKDILSNAHIQNELESEFEKMKED
REVLRVIFPTGDSKVVLPCNLMRMIWNAQKIFHINPRVPSDLHPIKVVEGVKDLSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDSKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA
AAHGDSDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF
FGTAPSPMSGMSPAMTPWNQGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPSSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPT
YSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY
SLTSPAISPDDSDDEN
NT seq
5991 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcccgccctcgggcgacagcgcatgcccgctgcgcaccatcaagcgggtgcag
ttcggcgtcctcagcccagatgagctgaaacggatgtctgttacagaaggtggcatcaag
taccctgagactactgaaggtggacgccccaaacttgggggactgatggacccccgccag
ggtgttattgagaggacaggtcgctgccagacatgtgcagggaacatgacagagtgccca
ggtcattttggacacattgagttggcgaagccagttttccacgttggtttcctagtaaaa
actatgaaggtgctccggtgtgtttgcttcttctgttccaagctgttggtcgattcgaac
aatcccaagatcaaggacattctggccaaatcgaaaggacagcctaagaagcgtttgacc
cacgtgtatgatctctgcaaaggcaagaatatctgtgagggtggcgaggagatggacaac
aagtttggcgtggagcagacagaaggggatgaggacatcaccaaggagaagggccatggt
ggctgtggtcgctaccagcctcgcattagacgttcgggcctggagctgtacgcagagtgg
aagcacgtgaatgaggactctcaagagaagaagatccttctcagccctgagcgggtgcat
gagatcttcaagcgcatttccgatgaagagtgctttatcctgggtatggaacccaagtat
gcccgccccgaatggctcatagtgacggtgttgccagtccctccgctgtctgtccggcct
gcagtggtcatgcagggatctgccaggaaccaggatgacctgacgcacaagctggccgac
gtggtgaagataaacaaccagctgcggcgtaacgagcagaatggcgcagcagctcacgtc
atagcagaggacgttaaacttttgcagttccatgtggccacgatggtggacaatgagctg
ccagggctgcccagggccatgcagaaatccggtcggcccttgaagtccctcaaacagcgg
ctgaagggcaaagaagggcgcgtacggggcaacttgatgggcaaacgtgtggatttctca
gcacggacggtcatcaccccggatcccaatcttcaaattgatcaagtaggggtgccgcgt
tccattgctgccaatatgaccttcccagaaattgtcacacccttcaacattgacaggctt
caggaactggtgcgccggggaaacagccagtacccaggagccaagtacatcgtccgagac
aatggcgatagaatcgatctacgcttccaccccaagccaagtgacctacacttacagata
ggctacaaggtggagaggcacatgtgtgatggggacatagtcattttcaaccggcagccc
acattgcacaaaatgtctatgatgggacacagggtacgcattctaccctggtctacgttc
aggctgaatctcagtgtgacaacgccatacaatgcagactttgatggggatgagatgaac
ctccatctgccacaatctctggagacgcgagcagagatccaggagctggccatggtgcct
cggatgattgtcacgccccagtccaaccggcctgtcatgggcattgtgcaggacactttg
accgctgttcgcaaattcaccaagcgggatgtcttcctggagaggggtgaagtgatgaat
ttgctcatgtttttgtccacgtgggacggcaaagttcctcagcctgcaatcttgaagcca
cgtccactttggacagggaagcagatcttctccttgatcataccgggacatatcaactgc
atccgaacccacagcactcatcctgacgatgaggacagtgggccttacaagcatatatcc
cctggagataccaaggtcattgtggagaatggtgagcttatcatgggtatcctgtgtaag
aaatccctggggacatcagctgggtcgttggtccatatctcctatctggaaatgggtcat
gatgtgactcgccttttttactccaatattcagactgtcatcaacaactggttgctgatt
gaaggtcacacaattggaattggagactctattgctgatgccaagacctaccaggacatt
cagaataccattaagaaagccaaacaagatgtgatagaggtgattgagaaagcacacaat
aacgaacttgaacccacgccagggaacacgctgcgacagacctttgagaatcaggtcaac
cgcatcctgaacgatgctagagacaagactggttcttcggcccagaagtccctgtcggag
tacaacaacttcaagtccatggtggtgtcgggagccaaaggctccaagattaatatctcg
caggttatcgctgtggtaggacagcagaacgtagaaggcaaacggatcccctttggcttc
aagcaccgcaccctgcctcacttcatcaaagatgactatgggccggagagcaggggcttt
gtggagaactcctacctggccgggctgacccccacagaattcttctttcatgccatggga
ggcagagagggactgatcgacacagctgtgaaaacagctgagacaggttacattcagagg
cgtctgatcaagtccatggagtctgtgatggtgaagtacgatgctacagtgcggaattcc
atcaaccaggtggtgcagctgcgctacggcgaggatggccttgctggggagagcgttgag
ttccagaacctggcaacactgaagccctccaacaaagcttttgagaaaaagtttaagttt
gattatactaacgagcgagccctgcgccgtacgatgcaggaggatctggtgaaagacatt
ctcagtaatgcccacatccaaaatgagctggagagcgagtttgagaagatgaaagaggac
cgtgaagttctgcgggtcatcttccccacgggggacagcaaagtggttctgccctgcaat
ctgatgcgaatgatctggaacgcccagaagatttttcacattaaccccagagtaccttct
gacctacatcctattaaagtagtggagggcgtaaaggacctgagcaagaagctggtgatt
gtgaatggcgatgacccattgagccggcaggcacaggagaacgccacgctgctcttcaac
atacacctgcgctccacgctttgcagccggcgcatgattgaagagttccggctcagcggc
gaggccttcgactggctgctgggtgaaattgaatccaaattcaaccaggctattgcgcac
cctggcgagatggtaggtgcgcttgccgcccagtctttaggtgagcctgccacccagatg
actctgaacaccttccactacgctggtgtgtcggctaagaacgtcaccctgggagtgcct
cgtctgaaggagttgatcaacatctccaagaaacccaagaccccatctctgactgtgttc
ctgctgggacagtctgccagagatgctgaacgagccaaggatatcctgtgccggctggag
cacacaaccctacggaaggtcacggccaatactgcaatctactatgaccccaatccccag
aacactgtagtagcagaagaccaggagtgggtaaacgtgtattacgaaatgccagatttt
gatgtgacccgcatctcgccttggctgctgcgtgtggagctggatcgcaagcatatgact
gaccgcaagctcaccatggagcagattgctgagaaaatcaatgctggatttggcgatgac
ttgaattgcattttcaatgacgacaacgcagaaaaacttgtcctgcgcatccgcatcatg
aacagtgatgagaacaagatgcaagacgaagaggaggtggtggataagatggatgacgac
gtgttcctgagatgcattgaatccaacatgctgaccgacatgacgttgcagggtatagag
cagatcagtaaggtatacatgcacttaccacagactgacagcaagaagaaaatcattatc
acagaagatggggagtttaaggccttgcaggagtggattctggagacagatggtgtcagt
ctgatgcgggtgttgagcgagaaggatgtggaccctgtgcgtaccacctctaatgacatt
gtggagattttcacagtgctaggtatcgaggccgtgcgcaaagccctggagcgggaactc
taccacgttatctcctttgatggctcgtatgtcaactaccgtcacttggcgctgctgtgc
gacacgatgaccagccgtggtcacttgatggccatcactcgtcacggcgtgaaccggcag
gacacggggcctctcatgaaatgctccttcgaggagacggtggatgtgctgatggaggct
gcagcccatggagactcggaccccatgaagggtgtgtcggagaacatcatgttgggtcaa
ctggcccctgctggcacgggctgctttgacttgctgttggatgctgagaaatgcaaatat
ggcatggaaatccccaccaatatccctggcctgggagccgctggccccaccggaatgttc
tttggcacggcacccagccctatgagtggcatgtccccagcgatgacaccatggaatcag
ggggcaacaccagcctatggggcctggtcccccagcattggtagcggaatgacccctgga
gctgctgggttttctccgagtgctgcctctgatgctagcgggttcagcccaggttattcc
ccagcctggtcacccacccctggctccccgggctctccaggaccatccagtccttacatc
ccttcccctggtggtgctatgtctccaagttactccccaacttccccagcctatgaaccc
agatctcctggagggtatacgccccagagccccagctattcaccaacctcaccatcgtac
agtcctacgtcgccttcgtattctcccaccagccctaactacagtcccacaagtcccagc
tactctcccacttctcccagctactcccccactagtccttcatacagccccacctctccc
agctattctcccaccagccccagttactctcctacgtcacccagctattctcccaccagc
cccagttactctcccacgtcgcccagctattctcccactagcccttcctatagccctacg
tcgcccagctactctcccactagtccttcttacagccccacctcgcccagctactctccc
accagcccttcctatagccccacctcgcccagttactctcctaccagccccagttactct
ccaacctctcccaactatacacccacctcgcccaactacagccccacctctccaagctac
agccccacttctccctcctactcccccacttcgcctaactacacgcctacttcgcccaat
tacagccccacctccccgagctacagccccacctctcctagttatagccccacttccccc
agttactctccttccagtcctcgctacacccctcagtcgcccacttatacccccagctct
cccagctactccccaagcagcccaagctactcgcccagcagtcccaaatacaccccaacc
agtccctcttacagccccagctctccagaatatactcccaccagccccaagtactcccca
acgtctcccaaatactccccaacttctcccaagtactctcctacgtctcccaaatactct
cctacgtctcccaagtactctcctacgtctcccaagtactccccaacttcccccaagtac
tcgcccacctctccaacgtactctccgacaacgccaaaatactcccccaccagccccacc
tattctcccacctctcctgtttacacacctacctctcccaaatattctccaacctcgccc
acctactcgcccacctcgccaaagtactcgccaacttcacctacctactctccgaccagc
cccaagggctctacgtactctcccacctcacccggctatagccctacctcccccacctat
agcctcaccagcccggccatcagccccgatgacagcgatgacgagaattag
DBGET
integrated database retrieval system
