Geotrypetes seraphini (Gaboon caecilian): 117351453
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Entry
117351453 CDS
T09159
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Kunitz_BPTI
Pur_ac_phosph_N
DUF1194
Motif
Other DBs
NCBI-GeneID:
117351453
NCBI-ProteinID:
XP_033782630
UniProt:
A0A6P8PLW5
LinkDB
All DBs
Position
17:complement(5978915..6148640)
Genome browser
AA seq
2979 aa
AA seq
DB search
MKGWIPLFTVLQTVLFAPKEVTGQQGTCRNVYAADVVFVVDGSSSIGRTNFKIIKTFMEG
LVIPFVNVVSQNGVRFGVVQYSDDPRTEFTLSRYANGTEVMEAIRSLGYKSGNTRTGAGL
RYAADNFFGPTIIRPSVSKIAILITDGKSQDDVDEPSLKLKNKDVKVFAVGIKNADTREL
KRVASSPIDEFFFYVNDFKILGSLLPLVSQRVCTTTGGFLETESTKGPSNLRISEQTSGS
MRIQWTGAGGPITGYRVQYVPLTSLGQQITTERKELSLTAGETTTMLQGLKAGTEYQITV
IAQYANNVGESVSGKGRTLALTGVSNFRVAEAGPSFLRLAWVPGGESLQGYRITYTSRGD
VQGEAKTLSASAVSDTLLNLLPNTEYIITIHPLYLQQMGASSTITGRTQQLEGVQRFMAH
NISSHGMVMMWSGVRGATGYRISWELLSEGRFQKHDVEANKNAFAIQNLQPNTDYRVTIA
PLYGTTEGPATSTTVKTDIGIMQTLSVVVLGPSSIRVNWNIIPEARGYRLEWRRATGSKS
PQSMSFPTNTNNYDITGLRPGTAYRITLYTLYDGREIATPATISQTGLAPVGSISNLRVI
HSEGKKIRLGWIGVPGATEYKVVIHSSDGGFERVRRVPGSQTTLELDDLQEEVTYNLRVS
ALIGNREGSAVPLQVRIEETFVPGVTNMRVIDTGVNHIRISWSGTARATGYKITWRHSDG
REFSRVVPADQTSFSIDGLQANSAYGIRVSTLMGNRESTPTTISARTDDVPIGSVTNLRV
METGSNQIKIAWTAAARATGYRILWRRSDGAEISKTVTGDITFIDIKDLEADTTYTIRVL
PLVGSREGSPVSVSARTDPQQIGTVTRLQVLESRNNVIRVTWVGVPGATAYRIVWRKIDG
GPEHMKEVPGNRNTFDLVNLEGGMSYSVQVTALVGNREGDPVSITIATPEMPVRTVENLH
VIESTGDRIKVAWDVRTGISGYRVSWRLEDGPETSRLIGGNLNSFDIDNPQPGGLYEIKV
SAIVGNRESEPVLISARMVCGKGRADIIFLVHGTRDNAYNEEAVKSFLTNVVSSLGRLGP
AATQVGLVIYSFRGRSWILLNRSSDESAVLKQIQSIPFEEPSGTSIGAAIEYAKNNMFTP
SFGRRPGVPGILVVLADGPSSDDVLEPARDIKAAGIQVLAVGFDGADQEQLRRIVSDLNQ
KNLFFARDADSLSQLEGSLMNTLCSIAAQEQESCAIQCPRGEKGLKGETGQNGLPGSPGP
PGPRGPPGDSKVIQGQKGEQGFPGADGSPGSPGRPGNPGSPGLPGNQGLPGLRGNPGERG
SVGTKGEKGEAGVPGAGELQGRKGDPGNPGIPGQPGLPGQRGISGDPGLPGTPGHIGPQG
PPGTSIKGERGERGERGPPGLINGEVSRGEPGEPGLPGMPGSAGPKGSSGLSGQKGEKGE
AGESFPGLPGRTGDPGDRGPRGPPGEQGSKGDRGSPGEAGEAGEKGERGSSGQPGLKGTE
GSTGPSGPTGNAGAPGTAGPRGEKGDRGPPGEPGQLEGGPSGSKGGKGDRGPTGQEGPKG
SRGEPGEKGERGPSGYGILGEPGSKGEPGERGLTGLSGKPGAKGDQGDPGEKGEAGKPGP
LGQIGLRGKEGERGEKGDEGTPGESGTPGKNGERGPRGLPGARGNPGEKGDLGDPGESGR
NGNPGIPGNKGDRGEPGLQGPPGRPGDGDRGGGGEKGDAGDPGQQGMKGQKGEAGQAGVP
GERGIEGPRGLPGPRGDSGDKGPAGEKGERGSPGLDGRNGLDGKPGLNGSPGQRGDQGKQ
GDPGRDGLAGLRGEQGPPGPLGPIGPPGSPGKPGDDGKPGQNGKNGEDGNPGDDGRKGDK
GDPGVSGRDGRDGSKGERGDIGLTGSPGPPGVPGVPGQIGPPGQGSPGLPGISGLKGERG
ESGAKGDPGKPGDPGQKGDHGSSPNVERVLDSMGIKVSLLKDMLDTYDESSGSLIPVSER
RKGQKGEPGNPGEKGYSGKDGVIGFPGERGQKGDRGHHGDPGPMGPPGRTVGEIGVPGPS
GQPGEPGKPGIPGLPGRAGELGEAGRPGEKGTRGEKGDQGQQGKEGNPGPVGPPGPKGES
VAGSDAGLPGERGNPGLKGAKGDPGVDGERGPKGDKGAEGQKGDRGEPGEKGRDGTLGPP
GEKGLPGSEGKPGMPGFPGVLGRPGNPGDPGAQGPPGLLGPVGPQGPPGVKGNPGEPGTG
LRGLPGVQGNVGPPGPIGPPGLVGPPGVAGVPGQVGESGKPGVSGRDGLPGKDGEMGMPG
KMGIPGPTGPAGPKGEPGDAGVLGEAAVGPPGMKGEKGAPGALAEGALGEPGARGERGFQ
GLKGEKGDVGRAGEPGDPGEHGTKGPHGTKGDKGEAGVGLQGSPGQVGPQGLKGDPGLPG
PPGPPGLPGHVGTPGVPGLRGENGHQGPPGPSGERGLIGIQGRDGNPGAQGLPGSAGPVG
SQGPAGLKGDKGDAGVGQPGPRGERGDPGPRGEDGRPGLEGDRGLLGPPGNRGERGDKGD
SGPLGQKGDKGETVTVEGLAGAKGNKGELGDRGLKGSEGGKGDKGDQGIHGEKGVKGEQG
ENGSSGFPGARGPGGQKGEVGQPGEPGESGSPGKEGIPGSRGEKGDFGPAGMRGPKGERG
MKGNCGQDGEKGDKGDSGIPGRNGPPGRKGDSGEPGIPGTSGIPGKEGIVGPKGDRGFDG
QQGSKGDQGEKGDRGAPGAIGPQGPRGSDGAAGPPGSPGPVGSKGPEGIQGQKGERGPAG
ESVPGPRGSPGSPGERGEQGNQGLNGMKGEKGAPGMTEEEIRGFVKQEMSQHCACGGALP
DYQSSPSYLSLKSRLIPVLKLSRTDEEEGQKPAVNTDDPEYENMYSMEDFKEEIEPDGTK
GSILMDDVMTSTVTPEHRRHKRDTSEQDPCNLHLDEGDCTTYTLKWYYNQKMTECRLFIY
SGCGGNLNRFETKEDCTLQCTDMGAAGSQWRKDATAGKS
NT seq
8940 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggctggatcccgctattcacggtgctacaaactgtgctcttcgcccctaaagaa
gttacaggacagcaaggaacgtgtagaaatgtttacgccgctgatgtcgtgtttgtggtg
gacggatcctccagcattggacggaccaacttcaaaataatcaaaacctttatggaaggg
ctggtgatcccctttgtcaatgtggtcagtcagaatggggtacgctttggggttgttcag
tacagcgacgatcccagaacagagtttacgttgtctcggtatgccaacggaacggaagtt
atggaagccatccgtagcttggggtataagagtggaaacacgaggacaggtgctggtctg
agatacgctgctgataacttctttggcccaactattatcagacccagtgtgtcaaagatt
gctattttgataacagatggaaaatctcaagatgacgtagacgagccgtccttaaaactg
aagaataaggatgttaaagtctttgcagtggggataaagaatgctgacacccgagaactg
aaaagagttgcctcttctccgattgatgaattctttttctatgtcaatgacttcaagatc
cttgggtcacttctaccgctggtctctcagagggtgtgtaccaccacaggaggatttctg
gagacagagagcactaaaggaccatccaacctacgtatctcagagcaaacatctggttcg
atgagaattcagtggactggggcaggtggacccatcacaggatacagagtccagtacgtt
cctcttactagtctggggcaacagatcacaacggaacggaaggagctcagccttacagcg
ggtgaaaccactacaatgcttcaaggtttgaaggccgggaccgaatatcagatcacggtc
attgctcagtatgccaacaatgttggcgaatcggtgtctggcaaggggcgaactctggct
ctgactggagtttcaaacttccgtgtggcagaggcaggtccttcttttctcaggcttgct
tgggtaccaggaggagaatcactgcaggggtataggatcacgtacacaagtcgaggcgat
gtccagggagaagcgaagactctgagcgctagtgccgtttcggacaccctcctcaacctg
cttcccaacacagaatatatcattacaattcacccattgtatctgcagcaaatgggggct
tcgtcaaccattactggaagaacacagcaactggaaggcgtccagcgctttatggctcac
aacatctcctcacacgggatggtgatgatgtggtcaggagtcagaggggccaccggatac
cgcatctcgtgggagctcctgtcagaagggcgatttcagaaacatgacgtggaagcaaac
aagaatgcatttgccatccagaacctccagcccaacacagattaccgtgtgacgatcgcc
cctctttatggaacaacagaaggaccagccacctcgacaacggtaaaaacagatatagga
ataatgcagaccttgagtgtcgtcgtcttaggtccctcatccatccgagtgaattggaac
ataattcccgaagcgaggggctacaggctagaatggagaagggccacaggttctaaatcg
cctcagtctatgtcgttccccaccaacaccaacaactatgatatcacaggtcttcgaccg
ggtactgcgtaccggattacactctacaccctttacgatggaagagagatagctacacca
gcaacaatatctcagacagggttggcacctgtcggaagcatctccaacctgcgtgtgatt
cacagtgagggcaagaaaatccgattaggttggatcggcgtgccaggggctactgagtat
aaggtggtgattcacagctctgacggtggatttgaaagggtcagacgggtgccaggctca
cagaccacccttgaacttgatgacttgcaagaggaagtcacctataacctgcgagtttca
gctttgattggaaacagagagggcagtgctgttccccttcaagtacgtatagaagagaca
tttgtgcctggagtcacaaacatgcgtgtgattgacactggagtcaaccatataaggatt
tcatggtctggaacagccagagcgactggatataagatcacatggcggcacagtgatggg
cgtgagttctccagagttgtgccagctgatcaaacttcattcagcattgatggcctgcaa
gcaaactccgcctatggtatcagggtctcaactctgatggggaacagagagagcactcct
accaccatctcggccaggacagatgatgttcctattggcagtgttaccaacctacgtgtg
atggaaacaggttctaaccagattaagatcgcgtggactgcagctgccagggccactgga
tacaggatcctctggagacgtagtgatggtgctgagatctccaagacggtaactggagac
atcacatttatagatattaaggatctagaggcagatacaacctacactatccgagtgttg
cctctggttggaagtagagaaggcagcccagtttctgtcagtgccagaacagatcctcag
caaataggaacagtgacaaggctccaggtactagagtcaaggaacaacgtcatcagagtg
acatgggttggagttccaggagctactgcttacaggattgtgtggcgcaagattgacggt
ggacctgaacatatgaaagaagtgcctggaaatcgcaatacctttgaccttgtcaacctg
gaaggaggcatgagctactctgtgcaggtgacagctctggtaggaaaccgggaaggagat
cctgtctccatcaccattgcaacaccggaaatgcctgttaggactgtcgagaaccttcat
gtgatagaatcgacaggagatcgaataaaagttgcctgggatgtcaggacgggcatcagt
ggttatcgtgtcagctggagactggaagatggtcctgagacaagtcgtctgattggaggg
aatcttaactcttttgatattgacaatccacaacccggtggtctctacgaaatcaaagtt
tcggctattgttggaaaccgtgagagtgagccagtgttgatatctgctagaatggtgtgt
gggaaaggccgagcagacatcatctttctggtgcacggaacccgagataacgcctataac
gaagaagctgtgaaaagtttccttacaaatgtagtttcttccctaggacgactggggcct
gctgctacccaggtgggcttggtcatttacagcttcagaggacggtcttggatcctgctc
aatcgctccagtgatgaaagcgcggtcttaaaacaaatccaaagtattccatttgaagag
cccagtggaacatccattggtgccgccatagaatatgccaagaacaacatgtttacgccc
agctttggaaggagaccaggtgtgccaggaatcctggtggtgctggcagatggcccctcc
agcgatgacgtcttagagcctgctagagacataaaggcagctgggatccaagttctggcc
gtgggatttgatggagcagatcaagagcagctgcgtcgaattgtctcggacctaaaccaa
aagaacctcttctttgccagagacgcagacagcttgtctcagcttgaaggcagtctgatg
aacactctctgcagtatcgcagctcaggagcaggagagctgtgccatccagtgtccaagg
ggagaaaagggactgaaaggtgaaactgggcagaatggtttaccaggatctccaggtcct
ccagggccacgcggaccccctggagactctaaagtgatccaaggacagaagggggagcag
ggtttcccaggggcagatggttcacccggaagtcctggtcgccctggcaacccaggttcc
cccggcctacctggtaatcaaggcttacctggcttgagaggaaatcctggagaacgtgga
tctgttggaacaaaaggagagaagggagaggcgggagttcctggtgcaggagagttgcaa
ggcaggaaaggagaccctggaaatccaggaattcctggtcagcctggactccctggacag
agaggaatttccggagaccctgggcttcctggaactccgggacatattggcccacaagga
cccccagggacatctatcaagggtgaaagaggagaacgaggtgagagaggaccccctgga
ctaataaatggtgaagtttccagaggagagccaggtgaaccgggtcttccggggatgcca
ggctctgcaggtccaaaaggatcatctggtctttctggacagaagggagaaaagggagaa
gcaggggaaagttttccaggtttaccaggacgtacaggagatcccggcgatcgaggtccc
agaggccctcctggtgaacaaggcagtaaaggggatcgtggttctcctggagaggctggt
gaagccggagagaagggagagcggggatcatctggccagcctggattgaaggggacagaa
ggatcaacaggaccatctggacctacagggaatgcaggtgcaccagggactgctggaccc
cgaggggaaaagggagaccgaggcccgccgggtgaacctggacaattggaaggtggtcca
tcaggaagcaaaggcggcaagggtgacagaggccctacagggcaagaagggcccaaaggt
tccagaggagagcctggagagaaaggagaacgaggtccctctggttatggaattcttggt
gaaccaggatcaaaaggggagccaggtgaaaggggacttactggtctgtcaggcaaacct
ggagcaaagggggaccaaggggatccgggcgaaaaaggagaagcaggtaaaccaggacct
ctcgggcagatcgggctgcgaggaaaagagggtgagcggggagaaaaaggagacgaagga
acaccgggtgaatctggtactccaggcaaaaatggagaaagaggtcccaggggtttacca
ggcgcccgtggcaaccctggagagaaaggggacctgggagacccgggagagtcgggaaga
aatggcaatccaggaattcctgggaacaaaggtgaccgaggagaaccaggacttcaaggc
cctccaggaagacctggtgacggggacagaggagggggaggagaaaagggcgatgcaggt
gaccccggacagcaaggaatgaaaggccaaaagggagaggctggccaggcgggtgtcccc
ggtgaaagggggatcgaaggacctagagggctccctggacctcgaggtgattctggagac
aaaggtccggcaggagagaagggagagaggggctctccagggcttgatggacggaatgga
ttggatggaaaacctggtttaaatggatctccaggtcaaaggggtgaccaaggaaagcaa
ggtgatccgggtcgagatgggctggcaggtttgaggggagagcagggccccccaggacca
ctagggcccataggacccccaggctcacctggcaaacctggagatgatggaaaaccaggc
cagaatggaaagaatggagaagatggaaaccctggagatgatgggagaaagggggataaa
ggtgacccaggagtctctggcagagatggtcgagatggttccaaaggcgaaaggggagat
attgggttgacaggctctcctgggccgcctggtgttccgggagtgccaggtcaaattgga
ccacctggccagggttcccctggtttacctggtatctctggacttaagggtgagagagga
gaatcgggagccaaaggggatccgggaaagcctggagatcctggacagaaaggagatcac
gggagctcgcctaatgttgaaagagttctggattctatggggattaaggtctcgctcctg
aaagacatgctggacacctatgatgaaagttccggatcacttatccccgtctctgaacga
cgaaaagggcagaaaggagaaccaggaaatccaggagagaagggatactctggcaaagat
ggtgtaataggatttcctggagaaagagggcagaagggcgatagaggacaccatggtgac
cctggccctatgggaccgccaggacgaactgttggagagattggcgtcccagggccctct
ggtcaaccgggagagccagggaagcctggcattccaggactgccgggccgagcaggagaa
cttggcgaggcgggaagaccgggcgagaaagggactcggggtgaaaagggagatcaagga
cagcaagggaaggaaggaaacccaggccctgtgggtcctccaggccccaagggagaatca
gtggcaggatctgatgccgggttgcccggagaacgaggaaatccaggactcaagggagca
aagggagatcctggagtggatggagagaggggacccaaaggagataagggtgcagaagga
caaaaaggagaccgaggtgaacctggagaaaaaggcagggatggcactttgggtcctcct
ggtgaaaagggactcccagggtcagaagggaaaccgggtatgccaggctttccgggagtg
ctaggcagaccggggaaccctggtgatccaggagcacaaggaccgcccggtctcctaggc
cctgtaggccctcagggccctcctggagtaaagggaaatccaggagaacctggcactggc
ttgcggggtttgccaggtgttcagggaaatgttggccccccaggacctatcggtccacct
ggacttgtgggacccccaggagtcgctggagtaccaggacaagtgggtgaatcgggaaaa
ccgggagtatctggacgagacggattaccgggaaaagatggagaaatggggatgcctgga
aaaatgggtattccgggaccaacaggacctgctggaccgaaaggagaaccaggagatgca
ggggtactaggggaggctgctgttggtcctcctggaatgaaaggggaaaagggagctcct
ggtgctctggcagagggggctctaggagagccaggtgcaagaggtgagcgaggatttcaa
ggcctcaaaggagaaaagggagatgttggtcgagctggtgagccaggagatcctggagaa
catggtacaaaaggaccacatggtaccaagggtgataaaggtgaagcaggtgttggattg
cagggctccccaggacaggtgggacctcaaggtctgaagggagatcctggtttacctggt
cctcccggaccccctggtcttcctggccatgtaggcacccctggtgtgccaggacttaga
ggagaaaacggacatcagggacccccaggaccatcaggagaaaggggcttgattggtatc
caaggaagagatggaaacccaggagcacaaggtttacctggttccgctggaccagtgggt
tctcaaggtcctgcaggcctgaaaggtgataagggtgatgcaggagttggccaaccaggc
ccaagaggagaaagaggggacccaggaccaagaggtgaagacggacgtccaggattggaa
ggagatcgtgggctacttgggcctccagggaatcgaggagaacgtggtgacaaaggtgac
tctgggcctttggggcagaaaggagacaagggtgaaacagttacagtagaaggacttgca
ggagccaaagggaacaagggagaacttggtgatcgtggcttgaaaggatcagaaggtgga
aaaggagataaaggagatcaaggcatccatggagaaaagggagtgaaaggcgagcagggg
gagaatggctcctcaggcttcccaggggcccgtgggcctgggggtcagaagggtgaggtt
ggacagcctggggaacccggagaatcaggttcgccaggcaaagaaggaattccaggcagt
cgaggggagaagggagactttgggcctgcaggaatgcgaggcccgaagggtgaaagaggt
atgaaaggcaactgcgggcaggacggtgaaaaaggagataagggagattcaggcattcct
ggacgaaatggacctccagggagaaagggagactcgggagaaccagggattcctggaact
tcaggaattcccggaaaagaaggtatcgtcgggcccaagggtgacagaggttttgatggt
caacagggctccaaaggggatcagggagaaaaaggggatcggggtgctccaggtgctatt
ggacctcagggtcctagaggaagtgatggagcagcaggacctcctggttctcctggccca
gttggctccaagggcccagaaggaattcaaggacaaaaaggcgaacggggtcctgcaggt
gagagtgttccaggacccagaggaagcccaggaagtcctggagagcgaggagaacagggc
aatcaaggactgaatggtatgaaaggagaaaaaggagcacctggaatgacggaagaggag
attcgtgggtttgtcaaacaggagatgagtcagcactgcgcttgtggaggtgctctccct
gactatcagtcttccccatcgtacctgtctcttaagtctcgtctcattccagtcctaaag
ctctctcgcactgatgaagaggagggacagaaaccggctgtgaacaccgatgaccctgaa
tacgagaacatgtatagcatggaagacttcaaggaagaaatagagccagacgggaccaaa
ggatccatattgatggacgacgtgatgacctcaactgtgactcctgagcacagacgacat
aaaagagatacctctgagcaagatccttgcaacctacatctggatgagggagactgcacc
acatacaccctgaagtggtactataaccagaagatgactgagtgtcgactgttcatctac
agtggctgtggcgggaacctgaaccgctttgagacaaaggaggattgtacactccagtgc
acagacatgggagcagcaggaagccaatggcgtaaggatgcaacagctggaaaaagctaa
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integrated database retrieval system
