Geotrypetes seraphini (Gaboon caecilian): 117365064
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Entry
117365064 CDS
T09159
Symbol
EXOSC5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117365064 (EXOSC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117365064 (EXOSC5)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117365064 (EXOSC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF4972
Motif
Other DBs
NCBI-GeneID:
117365064
NCBI-ProteinID:
XP_033810857
UniProt:
A0A6P8RZ32
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Position
8:complement(58877144..58917195)
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AA seq
214 aa
AA seq
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MDRDCCLRVFACEQNLLSRPDGSASFLQGDTSVLAGIYGPAEVKVSKEIFDKATLEVILK
PKIGLPAVQEKNQEQIIRNTCEAVVLATLHPRTSITIVLQVVSDAGSLLACCLNAACMGL
LDAGLPMKSLFCGVTCALDSERGIILDPTDKQEKESRALLTFAIDSLEKKVLMITSRGSY
SIEELQQCIATSQKAADKLFQFYRDSVSRKYSKS
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atggaccgagattgttgcttgagagtctttgcttgtgagcagaatctgttgtccaggccc
gatggttctgcatccttcctgcaaggtgatacctcggtccttgcaggtatctacggtcca
gcagaggttaaagttagtaaagaaatctttgacaaagcgacactggaagtcatcctgaaa
ccaaaaattgggttaccagctgtacaggagaagaaccaagaacagataatccgaaacaca
tgtgaggctgttgtgcttgcaactctgcatcccaggacgtccatcactatcgtcctacag
gtggtcagcgatgcaggctctctgctggcttgctgtctgaatgctgcctgcatggggctg
ctagatgctggattgcctatgaagtcattgttctgtggggtgacgtgtgcactggattcc
gagaggggcattatactcgaccccacggacaagcaagaaaaggagagcagagctctgctg
acgttcgccattgacagcttggagaagaaagtcctcatgatcacatccaggggatcctac
tccatcgaagagctccagcagtgcatcgccacatcgcagaaggcagccgataagcttttc
caattctacagagactctgtcagtcgcaaatattccaagtcctga
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