Geomonas subterranea: KP001_01100
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Entry
KP001_01100 CDS
T07936
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gsub
Geomonas subterranea
Pathway
gsub03030
DNA replication
gsub03410
Base excision repair
gsub03420
Nucleotide excision repair
gsub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KP001_01100 (ligA)
03410 Base excision repair
KP001_01100 (ligA)
03420 Nucleotide excision repair
KP001_01100 (ligA)
03430 Mismatch repair
KP001_01100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsub03032
]
KP001_01100 (ligA)
03400 DNA repair and recombination proteins [BR:
gsub03400
]
KP001_01100 (ligA)
Enzymes [BR:
gsub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KP001_01100 (ligA)
DNA replication proteins [BR:
gsub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KP001_01100 (ligA)
DNA repair and recombination proteins [BR:
gsub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KP001_01100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KP001_01100 (ligA)
MMR (mismatch excision repair)
DNA ligase
KP001_01100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KP001_01100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
U5_2-snRNA_bdg
DUF1967
Motif
Other DBs
NCBI-ProteinID:
QXE91167
LinkDB
All DBs
Position
complement(250331..252337)
Genome browser
AA seq
668 aa
AA seq
DB search
MDAQAAAGRIASLSKEIERHNRLYYEQDMPEITDAEYDALFRELQGLEREFPELALPDSP
TGRVGGRPLARFTQVRHSMPMLSLENAFTGQDMIDFDDRVKRFLGLAADTGISYVCEPKM
DGVAVELVYREGLLAIGSTRGDGVVGEDVTQNLKTIKDVPLRLETHEPPELLTVRGEVYL
PLAPFRKFNREREEAGEPPFANPRNAAAGSLRQLDSRITAKRPLSIFCYAPGELGGVEFT
SQSHFLKTIPEWRLPVNPLTRVVNGIKEMLAYYQEMMEKRDDLPYEIDGVVVKVDSFRMQ
RELGEKSRSPRWAIAWKFPPRQATTVVEQIFHSVGRTGVITPVAFLKPVNVSGVMVSRAT
LHNWEELERKDIREGDTVVIERAGDVIPAVVQVILDQRPEGAVKPQVPESCPVCGGEVVR
LPDEVAVRCVALTCPAQLLERVKHFASRRAMDIEGLGDKFIDQLLALKLIKDVADIYTLR
EEDFMQFERMGKKLAENLLNAIEASKERDLSRLIFALGIRHVGEHTAKLLAGAFGSIENL
AKASEEELTSIREVGPQVATSIADFFKSEDNLQVLERLKAAGVSPKVEEKRVGGRFTGKT
FVFTGALEKFTRDEAKKMVEQEGAHAAGSVSKKTDYVVAGADAGSKLEKARQLGVRVLTE
EEFLELMR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacgcacaagccgccgccgggcgcatcgcctcgctctccaaagagatcgagcgccac
aaccgcctttactacgaacaggacatgccggagatcacggacgcggagtacgacgcgctg
tttcgcgaactgcaggggctggaaagagagttcccggagctcgccctccccgactctccc
accggcagggtcggcggacgcccgctggccaggttcacccaggtgcgccacagcatgccg
atgctctccctggagaacgccttcaccgggcaggacatgatcgacttcgacgaccgcgtg
aagcgctttttgggccttgccgccgacaccgggatctcctacgtctgcgagccgaagatg
gacggcgtggccgtggaactggtgtaccgcgaggggcttttggcgatcggctccacccgc
ggcgacggcgtcgtgggcgaggacgtgacccagaacctgaagaccatcaaggacgtgccg
ctgcgcctggaaacgcacgaaccgccggaactgctcacggtgcgcggtgaggtctacctc
cccctggcccctttccgcaagttcaaccgggaacgcgaggaggcgggcgagcccccgttc
gccaaccccaggaatgcggcggcgggctccctgcgccagctcgactcccggatcaccgcc
aagcgtcccctgagcatcttctgctacgcgccgggggaactggggggcgttgagttcacc
tcccagagccactttctgaagaccatccccgaatggcggctgccggtaaacccgctgacc
cgcgtagtgaacgggataaaggagatgctcgcctactaccaggagatgatggagaagcgc
gacgacctcccctacgagatcgacggcgtcgtggttaaggtcgattccttccggatgcaa
cgggagctcggggagaaaagccgctcgccgcgctgggccatcgcctggaaatttccgccg
cgccaggcgaccacggtcgtggagcagatattccactcggtcgggcgtaccggggtgatc
acaccggtggccttcctgaagccggtgaacgtatccggggtcatggtgtcccgcgccacc
ctgcacaactgggaggagctggagagaaaggacatccgcgaaggggacaccgtcgtgatc
gagcgagccggcgacgtcatccccgccgtggtgcaggtcatcctggaccagcgcccggaa
ggtgcggtcaagcctcaggtgccggagagctgcccggtctgcggcggcgaggtggtccgc
ctgccggacgaggtggcggtacgctgcgtggcccttacctgcccggcgcagttgttggaa
cgggtgaagcatttcgcctcgcggcgcgccatggatatcgagggacttggggacaagttc
atcgaccagctgctggccctgaagctgatcaaggacgtagcggacatctacacgctcagg
gaagaggacttcatgcagttcgagcgcatggggaaaaagctcgccgagaacctcctgaac
gcgatcgaggcgagcaaggagcgcgacctctcgcggctcatcttcgcgctcggcatcagg
cacgtcggcgagcacaccgcgaagcttttggccggcgccttcggcagcatcgagaacctg
gctaaagcgagcgaggaggaactgaccagcatccgcgaagtcgggccgcaggtcgcgacc
agcatagccgatttcttcaagagcgaggacaacctgcaggtgctggagcggctcaaggcc
gccggggtaagtcccaaggtagaggagaagcgggttggtggcaggttcaccggcaagacc
ttcgtcttcaccggcgccctggagaagttcaccagggacgaggccaagaagatggtggag
caggaaggggcccatgccgccgggagtgtctccaagaagaccgactacgtcgtggccggc
gccgacgctggcagcaagctcgagaaggcgcgtcagttgggcgtgcgcgtgctgaccgaa
gaggagtttttggagttgatgcggtag
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