Gloeophyllum trabeum: GLOTRDRAFT_113454
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Entry
GLOTRDRAFT_113454 CDS
T03130
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03082
ATP-dependent chromatin remodeling
gtr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
GLOTRDRAFT_113454
03083 Polycomb repressive complex
GLOTRDRAFT_113454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gtr03036
]
GLOTRDRAFT_113454
Enzymes [BR:
gtr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
GLOTRDRAFT_113454
Chromosome and associated proteins [BR:
gtr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
GLOTRDRAFT_113454
HDAC complexes
Sin3A-HDAC complex
GLOTRDRAFT_113454
BRAF-HDAC complex
GLOTRDRAFT_113454
REST complex
GLOTRDRAFT_113454
SHIP complex
GLOTRDRAFT_113454
MiDAC complex
GLOTRDRAFT_113454
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
GLOTRDRAFT_113454
Heterochromatin formation proteins
Other heterochromatin formation proteins
GLOTRDRAFT_113454
Chromatin remodeling factors
NuRD complex
GLOTRDRAFT_113454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
NIL
Motif
Other DBs
NCBI-GeneID:
19299733
NCBI-ProteinID:
XP_007861243
JGI:
Glotr1_1_113454
UniProt:
S7QN69
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MSEKWTPVPEETQKKRVCYFFDSDIGGFHYGPGHPMKPTRIRMCHSLVMNYGLYKRMEIF
RAKPATKREMTQFHSDEYIDFLSRITPSNMGSYVKEQYKYNVGDDCPVFDGMFDYCSISA
GGSMEGAARLSRDKCDIAINWAGGLHHAKKNEASGFCYVNDIVLGILELLRYHTRVLYID
IDVHHGDGVEEAFYTTDRVMTCSFHKYGEYFPGTGELRDVGIGKGKYYALNFPLRDGITD
QTYRDVFRPVIQQVMDTYDPSAVVLQCGTDSLSGDKLGCFNLSMKGHADCVKFVKSFNKP
LLMVGGGGYTMRNVSRAWAFETGLATGVELSPSIPMNEYYEYFGPTYELDVKPSNMEDMN
TPRYLDRVRNILSDNLRRQGGPPSVQMQDVPRLPIDEMMDDIGAEDDLIPPDERRHQRLL
DTRRQADGELSDSDDEGEVRRLTVARRARGESSRASWASISAQRQALHLTALDPVPIRPC
RR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaaatggacccctgtaccagaggaaacccagaaaaagcgggtgtgctacttc
ttcgattccgacattggaggctttcactatgggcccggacaccctatgaagccgacgcgt
atacggatgtgtcactccttggtcatgaactatggcctctacaagcggatggagatattc
cgagctaaacccgccaccaaacgcgagatgacgcaattccactcggatgaatacatcgat
ttccttagtcgaataactcccagcaacatgggatcttacgtcaaagaacagtacaaatac
aacgtcggggacgactgcccagttttcgatggaatgtttgactactgctcaatatctgcc
gggggctcgatggagggtgctgctaggctgagccgagacaaatgtgatattgctattaat
tgggcgggtggcctgcaccatgccaaaaagaatgaagcgagtggtttctgctatgtcaat
gatattgtcttgggtattttggagctgttaagataccatacgcgcgttctctacattgac
attgacgtgcatcacggagacggagtggaagaggccttctataccacggaccgagtcatg
acgtgtagtttccacaaatacggggaatacttccctggtactggtgaattgcgggatgta
ggcatcgggaaagggaaatactatgccctgaatttcccactacgtgatggaatcacggac
caaacatatcgtgatgtgtttcgacccgtaattcaacaagtcatggacacctatgacccc
tcagccgtggtgttgcagtgtggcaccgactccttatcaggcgacaagcttggctgcttt
aacctgtccatgaaaggtcatgcagactgtgtgaagttcgtgaaatctttcaacaagccg
ttattgatggtgggtgggggtggctacaccatgcgtaacgtcagccgtgcttgggccttt
gaaacgggccttgcaacgggcgtcgagttatcgccatcaataccaatgaatgagtattac
gaatacttcggccccacttacgaactggatgtaaaaccttctaatatggaagacatgaac
acgcctcgatacctagatagggtgcgaaacattctgtcagataatttgaggcggcaaggg
ggtcctcccagtgtgcagatgcaagatgttccccggttaccgatcgacgagatgatggac
gacattggtgcagaggatgacttgatcccgccggatgaacgtcgccaccagaggctgctt
gacacgaggcggcaagcggatggagagctctcagactcggacgatgaaggggaagttcgt
cggttaacggtagcacgtcgggctcggggcgaaagttcaagggcgtcatgggcatcaatc
tcagctcagcggcaggctctgcatctcacggcgctggacccagtgccaatacgaccatgc
cgccggtga
DBGET
integrated database retrieval system
