Gloeophyllum trabeum: GLOTRDRAFT_75200
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Entry
GLOTRDRAFT_75200 CDS
T03130
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GLOTRDRAFT_75200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gtr03400
]
GLOTRDRAFT_75200
Enzymes [BR:
gtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GLOTRDRAFT_75200
DNA repair and recombination proteins [BR:
gtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
GLOTRDRAFT_75200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
Ribosomal_S6
Motif
Other DBs
NCBI-GeneID:
19308499
NCBI-ProteinID:
XP_007865213
JGI:
Glotr1_1_75200
UniProt:
S7Q9A2
LinkDB
All DBs
Position
Unknown
AA seq
1026 aa
AA seq
DB search
MQQPTPAPSSPPLSPAPDTTESKAEEKEKPPVENVGSTPFSVLTALFEKLQNERKPEKRR
KMLDSWFDHWRKEIGYNLFPVLRLILPQANRERAMYGLKEKNLAKIYIKLIPLGTKDPDA
IRLLNWKRPSDKDKASGDFPSVLYEIVSKRSSVIESSLTVDELNDILDELSLHSGSHSAQ
LQILKRVYNQCTPEDQRWIVRIILKDMQINIKETTVFAVFHPDAQDLYNTCSDLKKVAWD
LWDPKYRLGDQEKTIQLFRAFAPMLCKRPTNRIEESVKEMQGRTFYIEEKLDGERIQLHK
RGNQFWYCSRKGKDYTYLYGKHVGTKGTLTDAIAKAFDERVDEIILDGEMLVWDPVSERH
LPFGTLKTHAGNKSDDKDRPGPCFKVFDLLYLNGMSLLGKSCKFRKRNLRSCFKEIPGKL
EIITEWEGKTAKDVRTRMEQVMANRGEGLILKHPDSEYVLNGRNKDWIKVKPEYMDNMGE
TVDVLVIAGNYGSGWRANGVSTLICGVLDDRHRNDEDDEPKYSSFVRIGSGLSYGDYVWI
RSKPWKVWDKKSPPSFFRTSRKGQEDKGDVYLEPQDSFILKVKAAEITPSDQYHLGYTMR
FPRALQIRDDLSIADCMTASAIFEALRSEKKRKMDDEEQKTKKKRKTTFKKPTLMPEYKG
HDLKEVEVVSDVFEGMTFMVASDPKSRRGEEDKKDLLKLIKAHGGNCVQTVGRRRDVLLI
YGGTTTPYDLSLLIKKDTHDILKPQWIRDSITIGEPAPFHKRYYFYATPDRKETHEYREG
ESLNTESADAQSLDTVSDVKSPAPPESKGESPASDWFKVDKPIEQEDNTLDEESETEVDD
DSDNADVNLEEDDDDWLKVESKAGTDAADDMSQLDISDLPKGVQVALGVSQSQPENQDQG
STARMGEDDAAMEYDQERIFRHLCFYLDTPENARAHGFALRSTKHEQQITSKFEEVKKLI
LDNGGKIVDLDDPKLTHIVIDKRDDSRRVELMKRTSEPKHRRLVIGEYIQACLDEGTLLD
EDEFMP
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaacctacaccagcaccgtcttctccgcccttatcccctgcgcctgacacgacc
gagtcaaaggctgaagaaaaggaaaagccaccggtcgagaatgttggaagtacaccattc
agtgtgctaactgcactgttcgagaagcttcagaatgagaggaagcctgagaagagacgg
aagatgttggatagctggttcgatcattggcggaaggagatcggctacaatctgtttcct
gtcctccggctaatactaccccaggcaaatcgcgaacgcgctatgtacggactgaaggag
aagaatcttgctaagatctacatcaaactcattccattgggtaccaaagaccctgatgca
atccgcttgctaaattggaagaggccgtcagacaaggataaagcatctggagatttcccc
agcgtgctatacgaaattgttagcaaaaggtcctctgtcatagagagctccctgacggtt
gatgagctgaatgatatactcgacgagctatccctgcattcgggcagccactctgcacaa
ctccaaattctgaagcgtgtttataaccagtgtactcccgaagatcagcgatggattgtg
cgcataatccttaaagacatgcagatcaatatcaaggagaccacagtctttgcagtgttc
catccggacgctcaggacctatataatacttgttcagacctcaagaaagtggcttgggac
ctctgggatcctaagtatcggttgggggaccaggaaaaaaccatacaactgtttcgcgca
tttgcgcccatgctgtgtaagcgtccgaccaacaggatcgaagaatccgtgaaggaaatg
caagggcggaccttctatattgaggagaagcttgacggggagcgtattcagttgcacaag
cgagggaaccaattctggtattgctctagaaaaggcaaggactatacctacctttacggc
aagcatgttggaacgaaagggactctgactgatgccattgctaaggctttcgacgagcgg
gtggatgagattattttggatggggaaatgctcgtctgggaccctgtgtcggagagacat
ctcccattcgggacgttaaagactcatgctgggaataaatccgatgataaggacaggccc
ggaccgtgcttcaaagtattcgatctcttatatcttaatggcatgtccttgcttggcaag
tcctgcaaatttcggaagcggaacctccggtcgtgcttcaaggaaatcccaggcaagctc
gaaatcattacagaatgggagggtaagaccgcgaaagatgtaaggacccggatggagcag
gttatggcgaataggggagaaggcttgattttgaagcatcctgattcggaatatgttctc
aacggacggaataaggactggatcaaagtaaagcccgaatacatggacaacatgggcgaa
acggtggatgtcctagtaatagcggggaattacggatcgggctggcgcgctaacggtgtc
tccactttaatctgcggcgttctggatgacaggcaccgcaacgacgaggatgacgagccg
aaatacagctcatttgttcgtataggctctggcttgtcttacggagattatgtctggatc
agatcgaagccttggaaagtatgggacaaaaaatcccctcccagcttcttccgaacatca
aggaaaggacaggaggataagggtgatgtctatcttgagccccaagattcgtttattctg
aaggtgaaggcagcagagatcacaccatctgatcagtatcatttgggctatactatgcgc
tttccacgtgcgctccaaatacgcgacgatctgtctatcgcggattgcatgacagcaagt
gctatatttgaggccctccggtctgagaagaaaagaaagatggacgacgaggaacagaaa
actaagaagaagcggaaaaccactttcaagaagccaacactcatgcccgaatacaaaggg
catgacctcaaggaagtagaagtagtgtctgacgtttttgaaggaatgacattcatggtg
gcttctgatcccaagtcaaggaggggtgaagaggacaagaaagaccttctgaaactaatc
aaggctcacggtggcaactgcgttcagacagtcgggagacgccgcgatgtcctacttatc
tatggcgggaccacgactccctatgatctgagtctattaattaagaaagacactcatgac
atactcaaaccacaatggatccgggactcgataactataggagaaccagcaccctttcac
aagcggtactatttttatgcgacgccagatcgtaaagagacccatgagtacagagaagga
gaatcattgaatactgagagcgccgatgctcagtcgttagacactgtatccgatgtcaag
tctcccgcacccccggaatcgaaaggggaaagcccagccagcgactggttcaaagtcgat
aaacctatcgagcaggaggacaatactttggatgaggagtctgaaactgaagttgatgat
gactcagataacgccgacgtcaatctcgaagaagacgatgatgactggctgaaagttgaa
tccaaagctggaacagatgcggcggatgacatgtcccagcttgatatctctgatcttccg
aagggtgttcaagtggccttgggagtctcacagtcgcagcctgagaaccaggaccagggt
agtaccgcccgcatgggtgaagacgacgcagccatggaatatgaccaagagaggatattc
aggcatctgtgtttctatctggacactcccgagaacgctcgcgctcacggattcgcattg
agatcaaccaaacacgagcagcaaatcacttcgaagttcgaggaggtaaaaaagctgatc
ctcgataatggcggaaaaatagtcgatctcgatgaccccaagctgacccatatcgtgatt
gataaacgcgacgatagccggcgagtagaactcatgaagcgcacatctgaaccgaagcac
aggcgtctagtcatcggagaatacatccaggcttgcctcgatgaaggaaccttgttggat
gaagacgaatttatgccctga
DBGET
integrated database retrieval system
