Geotalea uraniireducens: Gura_3452
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Entry
Gura_3452 CDS
T00521
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gur
Geotalea uraniireducens
Pathway
gur03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Gura_3452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gur03400
]
Gura_3452
Enzymes [BR:
gur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Gura_3452
DNA repair and recombination proteins [BR:
gur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Gura_3452
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ABQ27608
UniProt:
A5G740
LinkDB
All DBs
Position
complement(4059086..4060690)
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AA seq
534 aa
AA seq
DB search
MGLKEYASKRRFEKTPEPKPDVPHEGRRLVFVVHKHAARALHYDLRLELEGVLKSWAVPK
GPSLDPSVKRLAVMVEDHPLDYRDFEGVIPEGNYGAGSVIIWDRGFYRHPSAGDENENEK
LLLDGLRKGDMKFVLEGEKLRGEFALVRMGKDGKSWLLLKKKDRYASKGEILQENRSVVS
HKTLEEMLEAGGQKSFKQKKINQIRLHEAKESEELHDAPVKPMPHNIKPMLATLAREPFD
HPDWVFEVKWDGYRAIAEMRDGDVALYSRNLLSLQQKFSPIADALRECRFDAVLDGEIVV
VDDRGHPDFQLLQNYQKSGNGHLLYYVFDLLYFQGHDLTGLPLLRRKEILKKILPSAPKI
KYSDHVWKDGVLFFTVVREKGLEGIIAKHAQSAYQMGIRSRQWLKVKTRLTQEGVIAGFT
EPRGGRKCFGTLVLGVFQGDELIYIGHSGGGFGAKDLQEIRAKLEPLIRKECPFKVRPET
NTPATWVKPELVCEISLSGWTEDAVMRHPVFLRLREDKTAREVVRDSGGEGGNL
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgggcttaaaggaatacgcatccaaacggcgattcgagaaaacacccgaaccgaaaccg
gacgttcctcacgaggggcgccgtctcgtgttcgtcgtgcacaaacacgcggcccgggcc
cttcattatgatctcaggctggagctggaaggggttctgaaaagctgggccgtgccgaag
ggaccctcgctggatccttccgtaaaaaggctggccgttatggttgaagaccatccgctc
gattacagggatttcgagggggttatcccggagggtaattacggcgcaggaagcgttatc
atctgggaccggggtttctatcgtcacccctctgcaggagatgagaacgaaaacgagaaa
cttcttctggacggattaagaaaaggggatatgaagtttgtcctcgaaggggaaaaactt
cggggtgaattcgcgctggtcaggatgggaaaggacgggaagtcgtggctgctcctgaag
aaaaaagaccgctatgcaagcaagggggaaattctccaggagaaccgttccgtcgtgtcc
cataaaaccctggaggagatgctcgaagccggcggccagaaatctttcaaacaaaaaaaa
ataaatcagatccggcttcacgaagcgaaggaaagcgaagagctgcatgatgcgccggtt
aaaccgatgccgcacaacataaaaccgatgctcgcgaccctggccagggaaccgttcgac
catccggactgggtcttcgaagtgaaatgggacgggtaccgggccatcgcagagatgcgg
gacggagacgtcgcgctctattcccgaaacctgctctcgttgcaacaaaagttttctccc
atcgcggacgcgttgcgggaatgcagattcgatgcggttctggacggcgaaatcgtcgtc
gtggatgatcggggacatcccgatttccagttgctgcagaattaccagaagtctggaaac
ggccatcttctttactacgtcttcgacctcctctacttccagggacatgatctgaccggc
ctccccctgctcaggaggaaagagatcctgaaaaaaatcctcccttcagccccgaaaata
aaatacagcgatcacgtatggaaagatggggtcctgtttttcaccgtcgtaagagaaaag
ggactggaggggatcatcgccaaacatgcgcaaagcgcgtaccagatggggataaggagc
cggcagtggctgaaggtgaagacgcggctcacgcaggagggggtgatcgccggtttcacg
gaaccgaggggtgggagaaagtgtttcggcaccctcgtcctgggcgtgttccaaggggac
gagctgatctacatcggccattcgggaggcggattcggggcgaaagatctgcaggaaatc
cgcgcgaaactggagcccctgatccggaaggaatgcccttttaaagtgcggccggagacc
aataccccggccacctgggtaaagccggagctggtctgcgagatttccttatccggctgg
actgaagatgccgtcatgagacaccccgttttcctgcggctgcgcgaggacaaaaccgcc
cgcgaagtggtgcgcgacagcggcggcgaaggaggtaacctatga
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