Gardnerella vaginalis HMP9231: HMPREF9231_0972
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Entry
HMPREF9231_0972 CDS
T01939
Name
(GenBank) alpha amylase, catalytic domain protein
KO
K01176
alpha-amylase [EC:
3.2.1.1
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh00500
Starch and sucrose metabolism
gvh01100
Metabolic pathways
gvh01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
HMPREF9231_0972
Enzymes [BR:
gvh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.1 alpha-amylase
HMPREF9231_0972
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Gene cluster
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Motif
Pfam:
Alpha-amylase
Alpha-amylase_C
Motif
Other DBs
NCBI-ProteinID:
AEF31021
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Position
complement(1166206..1167888)
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AA seq
560 aa
AA seq
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MIHGIEVFTSFNKKALVKLKFVLARVAAITSCVAMILAGAVVASSPAIADEGAKSSQKTT
QKGVIVTAFQQNWRSIAKECKKTYGPEGVKYVQVSPPQDHIKGDQWWTSYQPVSYKLNSK
LGTEDEFKKMITTCKASGIGIIADAVINHTTGFANKDTVGVGGSKYDAANQSFPDAGYTK
DDFHKSTENINTYRKAEIVWTHRLVGLLDLDTSNPHVQKTLGEYFAHMLKLGVDGFRVDA
AKHMSPQDVKGIKDAAAEAAGTTPDKIWWMQETIGFSEQDPRIQPDQYLQTGEVNEFEYS
YRLRNYFYGSIENLKHITDKLIPSKKAAIFVTNWDTERDNASRVLTYKDGKKYELANTFM
LAYPYGTPNVFSGYEFTKRDEGAPGATQTSIPDVSCAKDSKWQCTQRLTSIRGMIGFYNA
VRGTKVTNWQDDDDNNVAFSRGNKGFLAINNTEEPQKVSYKTDLPDGEYCNVYESKDCTK
TVSVSGGKVKTTVDAESAVALHVNAVKSLGNARARNVTIFICVFVASICTFVVNRRFVEK
SKKLAKGNSDGVKTGETKGK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgatccacggcatagaagtatttacgagcttcaataaaaaggcgcttgtaaagttaaag
tttgtgttggcaagagttgcggctataacatcttgcgtcgctatgattttggcgggagca
gtagtcgcaagcagcccagcgattgcagatgagggtgcaaaatcatctcaaaaaactaca
caaaaaggtgtaatcgtaacagcgttccaacaaaattggagaagtatagctaaggaatgc
aaaaaaacgtacggcccagaaggcgtaaagtacgtacaagtatcacctccgcaagatcat
attaaaggtgaccaatggtggacaagctatcaacctgtaagctataagctaaattcaaaa
cttggcacagaagacgagtttaaaaagatgattacaacgtgcaaagcttcaggtattgga
attattgcagatgcggtaataaaccacacaactggttttgcaaacaaagacactgttggc
gttggtggaagcaagtatgatgctgcaaatcaatcgttcccagatgctggatatacaaaa
gacgattttcataagtcaacagaaaatatcaacacgtatcgaaaagcagaaatcgtttgg
acgcatcgacttgttggactattggatttggacacttctaatcctcatgtgcaaaaaact
ttgggagagtactttgcgcatatgctaaagcttggagttgatgggtttagagttgatgct
gcaaaacacatgtctccgcaagatgtaaagggcataaaagatgcagctgcagaggctgct
ggaacaacgccagataagatttggtggatgcaagaaacaatagggttttctgagcaagac
cctagaattcagccagaccaatatttgcaaactggtgaagtgaatgaatttgagtactct
tataggcttagaaactatttttatgggtctattgagaatcttaaacatatcacagataag
ttaattccaagcaaaaaagctgcgattttcgttacaaattgggatactgagcgagataat
gcaagcagagttttgacgtataaagatggtaaaaaatacgagcttgcaaacacgtttatg
ttggcgtatccatatggaactccaaatgtgttttctggttatgagtttacaaaacgagat
gagggagcacctggagctacgcaaacttcaattcctgatgtgagttgtgcaaaggattct
aagtggcaatgcacgcaaaggctaacttcgattcgcggaatgattgggttctacaacgcc
gttaggggcactaaggttactaattggcaagatgatgacgataataacgttgcatttagc
cgaggaaacaagggttttcttgcgattaataatacggaagagccgcaaaaagtgagttat
aagactgacttgccagatggtgaatattgcaatgtttatgagtctaaagattgtactaaa
actgtgagcgttagtggcggaaaagtaaagaccactgttgatgcggaatctgctgttgct
cttcatgttaatgctgtaaaaagtcttggaaatgctagagctagaaacgttacaatattt
atttgcgtgtttgttgcgtcaatttgtacgtttgttgttaatagaagatttgttgaaaaa
tcgaagaagcttgccaaaggcaatagtgatggtgttaaaacaggtgagactaaaggtaag
tga
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