Gardnerella vaginalis HMP9231: HMPREF9231_1243
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Entry
HMPREF9231_1243 CDS
T01939
Name
(GenBank) D-ala D-ala ligase N-terminal domain protein
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh00470
D-Amino acid metabolism
gvh00550
Peptidoglycan biosynthesis
gvh01100
Metabolic pathways
gvh01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HMPREF9231_1243
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HMPREF9231_1243
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
HMPREF9231_1243
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
gvh01011
]
HMPREF9231_1243
Enzymes [BR:
gvh01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
HMPREF9231_1243
Peptidoglycan biosynthesis and degradation proteins [BR:
gvh01011
]
Precursor biosynthesis
Amino acid ligase
HMPREF9231_1243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp
ATP-grasp_4
Motif
Other DBs
NCBI-ProteinID:
AEF31073
LinkDB
All DBs
Position
complement(1509348..1510493)
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AA seq
381 aa
AA seq
DB search
MTKKRVVFLYGGKADEHSISCISAAGVLSAVDESRFEIVRIAITKQGEWIVGGEDPRNFR
MEQGELPVITKTEQTRDVVLDPAKGADGFLVREADGTLTSLGHIDAVFPVLHGPNGEDGT
LQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDVRKFANDCANHFD
AYANEILEQVEEAKLEYPLFVKPSRAGSSFGVTKVESRDAKALADAVFEASKHDWRVLIE
QGIDAREIECAVLAARDGEEPKASWPGEVVLDKRQAGEDQFYDFDSKYMDSAASHVEVPA
NLPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPEGHVMINEINTMPGFTPISMYPKAW
EATGISYSDLITKLIEGVILD
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagcgtgtagtgttcttgtatggcggtaaagcagacgaacattcgatttct
tgcatatcggctgctggagtactcagtgctgtagacgaaagtcgatttgaaatcgtacgt
attgcaatcacaaagcaaggcgagtggattgttggcggcgaagatccgcgaaacttccgc
atggagcaaggcgagttgccagtaatcacaaaaaccgagcagacgcgcgatgttgtgcta
gacccagctaaaggtgccgacggatttttggtgcgagaggcagatggcacgcttacaagt
ttgggtcatattgacgctgttttcccggttcttcacggcccaaacggtgaagacggaacc
ttgcaaggtttgctagaaatgatgcaagttccatacgttggttgcggagttttggcatcc
gccgcgtgcatggataagtattacgctaagcaactttttaaggcggctggaattgatgtt
gctccaggaatcgcgctggatgtgcgaaagttcgctaatgattgcgcaaatcactttgac
gcgtacgcaaacgaaattcttgagcaagttgaagaagcaaaactcgagtatccacttttt
gtaaaaccaagccgagcaggatctagttttggcgttacaaaagttgaatcgcgcgatgct
aaagctttggcagatgccgtttttgaggcttcaaagcacgattggcgagtattgatagag
caaggaattgacgcgcgagaaattgagtgcgcggttcttgccgctcgcgacggcgaagag
cctaaagcgagctggcctggagaagttgtgctagacaagcgtcaggctggcgaagaccag
ttctacgattttgacagcaaatacatggattccgcagcttcgcacgtggaagtgccagca
aatctgccagaagaaactttgcagcgcgttcgcaatactgcgctcgcagcgttcaaagca
gcggacggtcgaggacttagtcgcgtggattctttcgttactccagaaggacatgtaatg
attaacgagatcaacaccatgcctggatttacgccaatttccatgtatccaaaagcttgg
gaagcaacgggaataagctacagtgatttaatcacaaaacttattgaaggcgtgatttta
gactga
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