Paenibacillus sp. Y412MC10: GYMC10_5971
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Entry
GYMC10_5971 CDS
T01100
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gym
Paenibacillus sp. Y412MC10
Pathway
gym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYMC10_5971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gym03019
]
GYMC10_5971
03009 Ribosome biogenesis [BR:
gym03009
]
GYMC10_5971
Enzymes [BR:
gym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYMC10_5971
Messenger RNA biogenesis [BR:
gym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYMC10_5971
Ribosome biogenesis [BR:
gym03009
]
Prokaryotic type
rRNA helicases
GYMC10_5971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACX68176
UniProt:
D3EMQ0
LinkDB
All DBs
Position
complement(6704309..6705925)
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AA seq
538 aa
AA seq
DB search
MLNKLNEVERLPNFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGT
GKTLAFMLPILQHIDPKRAYPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQ
DVEKQLRKLEGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEAL
IHALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSK
QDALRAMIEEHNPFLAIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFR
EAKLQLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGK
DLNDLQRIEEGISQRLKRVRYDSAAGSLRESSGGSGRDTGRPKKARNVSSLESDNERGQG
RSRADRGTGSGRSRGNEQGRGRAGSSRRDDRDSGRTGGRTGEGRGPSAAGGRGSGAREGG
RAGEGRGPQAGARGSSRGPSRTEGRGNLAGRGGQGGTRSSEGRAARGQSGGRRGGRSR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgctaaataaattaaatgaggtggaacgtttgccgaactttcaacagctgggcattgac
gaacaaagagtacgaaaactgaaggagcagggaattacggaaccgactccggtacagcaa
gagagcattccgctgctgctgcagggaaaggacgtcattgcccgggcgaagaccggcaca
ggcaagacgctggctttcatgctgccgattctgcagcatatcgatcccaagcgggcgtac
ccgcaggcgctcatcgttgcgccgacacgggaattggcattgcaaattacggaagaagcc
aagaagctgacggcaggagagccggacggcatcaaaattctggcggtctatggcgggcag
gacgtggagaaacagctgcgcaagcttgaaggcggacgccaattgatcatcggtacgccg
ggccggctgctggatcatttgcgccggggcacgttagagcttggcggcgtgaagcagctg
gtgctggacgaagccgaccagatgctgcatatgggctttttggatgaggtggaggcgctg
atccatgcgcttccgtatcggcgccaaacgatgctcttctcggcgacgatgcctgccggc
gtgaagcagcttgccggcaattatatgaatcaacctgtcgatatcgtgattaaaggggct
tccccgatcccgctggagcagatccagcaggtggtggtcgagtgtacggaccgctccaag
caggatgccttgcgtgcaatgatcgaagagcataatcccttcctcgcgatcatcttctgc
cggacgaagcgcagagccaccacgttgaacgaggcgctgttggcccatggctatcaatcg
gacgagctgcacggggatctgtcccaggcgaaacgggaagcggtaatgaagcgattccgg
gaagccaagctgcagctgctcgttgcaacggatgttgccgcgagggggctggacgtcgaa
ggcgttacccatgtctttaactacgatatgccccatgatgttgaaagttacatccatcgt
atcggccggaccggacgggcggggggtagcggtatggccatcacgtttgcggccggaaaa
gaccttaatgatctgcagcgcatcgaagaagggatctcccagcggttgaagcgagtacgc
tatgactctgccgccggaagccttcgggaaagctctggcggctcgggcagggatacgggc
cgaccgaagaaagcaagaaatgtctcgtcacttgaatccgataatgaacgtggtcaaggc
agaagccgtgccgatcggggcacgggttccgggcgtagccgcggtaacgagcagggtagg
ggaagggcaggatcatcgcgcagggatgaccgcgattcgggccggacaggaggccgtacc
ggagagggtcgaggaccatcggcggccggaggccgaggcagcggcgcgcgtgaaggcggt
cgtgcaggcgagggccgcggaccgcaagccggagcacgaggcagcagccgcggaccgtcc
agaaccgaggggcgggggaatctcgccggccgcggcggacaaggcggaacccgatcctcc
gaaggccgcgctgccagaggccaaagcggtggacgacgtggcggtcggagccgctag
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